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2YA1
Asym. Unit
Info
Asym.Unit (183 KB)
Biol.Unit 1 (176 KB)
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(1)
Title
:
PRODUCT COMPLEX OF A MULTI-MODULAR GLYCOGEN-DEGRADING PNEUMOCOCCAL VIRULENCE FACTOR SPUA
Authors
:
A. Lammerts Van Bueren, E. Ficko-Blean, B. Pluvinage, J. H. Hehemann M. A. Higgins, L. Deng, A. D. Ogunniyi, U. H. Stroeher, N. E. Warry, R. D. M. Czjzek, J. C. Paton, D. J. Vocadlo, A. B. Boraston
Date
:
17 Feb 11 (Deposition) - 20 Apr 11 (Release) - 05 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Glycoside Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Lammerts Van Bueren, E. Ficko-Blean, B. Pluvinage, J. Hehemann, M. A. Higgins, L. Deng, A. D. Ogunniyi, U. H. Stroeher, N. El Warry, R. D. Burke, M. Czjzek, J. C. Paton, D. J. Vocadlo, A. B. Boraston
The Conformation And Function Of A Multimodular Glycogen-Degrading Pneumococcal Virulence Factor.
Structure V. 19 640 2011
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Hetero Components
(4, 17)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
2a: ALPHA-D-GLUCOSE (GLCa)
2b: ALPHA-D-GLUCOSE (GLCb)
2c: ALPHA-D-GLUCOSE (GLCc)
2d: ALPHA-D-GLUCOSE (GLCd)
2e: ALPHA-D-GLUCOSE (GLCe)
2f: ALPHA-D-GLUCOSE (GLCf)
2g: ALPHA-D-GLUCOSE (GLCg)
2h: ALPHA-D-GLUCOSE (GLCh)
2i: ALPHA-D-GLUCOSE (GLCi)
2j: ALPHA-D-GLUCOSE (GLCj)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
4a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
2
GLC
10
Ligand/Ion
ALPHA-D-GLUCOSE
3
NA
5
Ligand/Ion
SODIUM ION
4
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:481 , GLY A:512 , ILE A:513 , THR A:514 , ASP A:515 , TYR A:519 , HOH A:3264 , HOH A:3265 , HOH A:3266
BINDING SITE FOR RESIDUE SO4 A 2152
2
AC2
SOFTWARE
THR A:898 , LEU A:899 , HIS A:941 , GLN A:944 , HOH A:3515
BINDING SITE FOR RESIDUE NA A 2153
3
AC3
SOFTWARE
ARG A:652
BINDING SITE FOR RESIDUE NA A 2155
4
AC4
SOFTWARE
LYS A:583 , ARG A:1035 , HOH A:3325
BINDING SITE FOR RESIDUE NA A 2156
5
AC5
SOFTWARE
ASP A:353 , HOH A:3083 , HOH A:3175
BINDING SITE FOR RESIDUE NA A 2157
6
AC6
SOFTWARE
TRP A:156 , TRP A:158 , TRP A:168 , ASN A:210 , ASP A:214 , TYR A:667 , ASP A:668 , ASN A:714 , HIS A:715 , PHE A:743 , ASP A:778 , LYS A:969 , ASP A:989 , TYR A:991 , GLC A:2151 , HOH A:3414 , HOH A:3694 , HOH A:3695 , HOH A:3696 , HOH A:3697 , HOH A:3698 , HOH A:3699 , HOH A:3700 , HOH A:3705
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 2144 TO 2147
7
AC7
SOFTWARE
TRP A:809 , ASP A:839 , ARG A:842 , TYR A:849 , ASN A:896 , LYS A:969 , ASP A:989 , GLC A:2145 , GLC A:2146 , HOH A:3470 , HOH A:3475 , HOH A:3583 , HOH A:3694 , HOH A:3703 , HOH A:3704 , HOH A:3705 , HOH A:3706
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 2148 TO 2151
8
AC8
SOFTWARE
TRP A:263 , TRP A:265 , TRP A:276 , LEU A:306 , LYS A:318 , ASN A:323 , HOH A:3099 , HOH A:3134 , HOH A:3708 , HOH A:3710
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 2158 TO 2160
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (183 KB)
Header - Asym.Unit
Biol.Unit 1 (176 KB)
Header - Biol.Unit 1
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