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2Y8G
Asym. Unit
Info
Asym.Unit (96 KB)
Biol.Unit 1 (47 KB)
Biol.Unit 2 (46 KB)
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(1)
Title
:
STRUCTURE OF THE RAN-BINDING DOMAIN FROM HUMAN RANBP3 (E352A-R353V DOUBLE MUTANT)
Authors
:
K. Langer, C. Dian, V. Rybin, C. W. Muller, C. Petosa
Date
:
06 Feb 11 (Deposition) - 16 Feb 11 (Release) - 16 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.61
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Protein Transport, Crm1-Mediated Nuclear Export
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
K. Langer, C. Dian, V. Rybin, C. W. Muller, C. Petosa
Insights Into The Function Of The Crm1 Cofactor Ranbp3 From The Structure Of Its Ran-Binding Domain
Plos One V. 6 17011 2011
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:378 , ARG A:384 , LEU A:385 , HOH A:2138 , HOH A:2139 , HOH A:2140 , HOH A:2141 , HOH A:2142 , ARG B:444
BINDING SITE FOR RESIDUE SO4 A1455
2
AC2
SOFTWARE
LYS B:403 , SER B:425 , SER B:426 , HOH B:2144
BINDING SITE FOR RESIDUE SO4 B1450
3
AC3
SOFTWARE
ARG A:359 , ARG A:374 , ARG A:378 , HOH A:2145
BINDING SITE FOR RESIDUE SO4 A1456
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(4, 8)
Info
All Exons
Exon 1.14 (A:330-335 | B:329-335)
Exon 1.15b (A:336-376 | B:336-376)
Exon 1.16 (A:376-423 (gaps) | B:376-423 (gaps...)
Exon 1.17 (A:424-454 | B:424-449)
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All Exon Boundaries
1: Boundary 1.13/1.14
2: Boundary 1.14/1.15b
3: Boundary 1.15b/1.16
4: Boundary 1.16/1.17
5: Boundary 1.17/1.18a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000340578
1
ENSE00001428577
chr19:
5978320-5978072
249
RANB3_HUMAN
1-8
8
0
-
-
1.3b
ENST00000340578
3b
ENSE00001115985
chr19:
5957984-5957929
56
RANB3_HUMAN
8-26
19
0
-
-
1.4
ENST00000340578
4
ENSE00001115983
chr19:
5951607-5951404
204
RANB3_HUMAN
27-94
68
0
-
-
1.5
ENST00000340578
5
ENSE00001306174
chr19:
5941846-5941810
37
RANB3_HUMAN
95-107
13
0
-
-
1.6
ENST00000340578
6
ENSE00000666160
chr19:
5941718-5941632
87
RANB3_HUMAN
107-136
30
0
-
-
1.7
ENST00000340578
7
ENSE00000666161
chr19:
5933490-5933425
66
RANB3_HUMAN
136-158
23
0
-
-
1.8
ENST00000340578
8
ENSE00000666162
chr19:
5932555-5932463
93
RANB3_HUMAN
158-189
32
0
-
-
1.9b
ENST00000340578
9b
ENSE00000666163
chr19:
5931542-5931415
128
RANB3_HUMAN
189-231
43
0
-
-
1.10
ENST00000340578
10
ENSE00001246903
chr19:
5928098-5927979
120
RANB3_HUMAN
232-271
40
0
-
-
1.11
ENST00000340578
11
ENSE00001246896
chr19:
5925748-5925645
104
RANB3_HUMAN
272-306
35
0
-
-
1.12
ENST00000340578
12
ENSE00000666166
chr19:
5924916-5924838
79
RANB3_HUMAN
306-332
27
0
-
-
1.13
ENST00000340578
13
ENSE00001246887
chr19:
5923925-5923823
103
RANB3_HUMAN
333-367
35
0
-
-
1.14
ENST00000340578
14
ENSE00001246883
chr19:
5923314-5923205
110
RANB3_HUMAN
367-403
37
2
A:330-335
B:329-335
6
7
1.15b
ENST00000340578
15b
ENSE00001246878
chr19:
5921332-5921212
121
RANB3_HUMAN
404-444
41
2
A:336-376
B:336-376
41
41
1.16
ENST00000340578
16
ENSE00000666170
chr19:
5918649-5918507
143
RANB3_HUMAN
444-491
48
2
A:376-423 (gaps)
B:376-423 (gaps)
48
48
1.17
ENST00000340578
17
ENSE00000666171
chr19:
5917991-5917805
187
RANB3_HUMAN
492-554
63
2
A:424-454
B:424-449
31
26
1.18a
ENST00000340578
18a
ENSE00001370280
chr19:
5917664-5916154
1511
RANB3_HUMAN
554-567
14
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2y8ga_ (A:)
1b: SCOP_d2y8gb_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Ran-binding domain
(7)
Protein domain
:
automated matches
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2y8ga_
A:
1b
d2y8gb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Ran_BP1_2y8gB01 (B:329-437)
1b: PFAM_Ran_BP1_2y8gB02 (B:329-437)
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Clan
:
PH
(111)
Family
:
Ran_BP1
(9)
Homo sapiens (Human)
(6)
1a
Ran_BP1-2y8gB01
B:329-437
1b
Ran_BP1-2y8gB02
B:329-437
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Asym.Unit (96 KB)
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