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2Y85
Biol. Unit 1
Info
Asym.Unit (300 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (77 KB)
Biol.Unit 3 (76 KB)
Biol.Unit 4 (77 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS PHOSPHORIBOSYL ISOMERASE WITH BOUND RCDRP
Authors
:
J. Kuper, A. Geerlof, M. Wilmanns
Date
:
03 Feb 11 (Deposition) - 02 Mar 11 (Release) - 16 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Isomerase, Bifunctional Enzyme, Tryptophan Biosynthesis, Histidine Biosynthesis, Tim-Barrel, Aromatic Amino Acid Biosynthesis
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. V. Due, J. Kuper, A. Geerlof, J. P. Kries, M. Wilmanns
Bisubstrate Specificity In Histidine/Tryptophan Biosynthesis Isomerase From Mycobacterium Tuberculosis By Active Site Metamorphosis.
Proc. Natl. Acad. Sci. Usa V. 108 3554 2011
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 1-(O-CARBOXY-PHENYLAMINO)-1-DEOXY-... (137a)
1b: 1-(O-CARBOXY-PHENYLAMINO)-1-DEOXY-... (137b)
1c: 1-(O-CARBOXY-PHENYLAMINO)-1-DEOXY-... (137c)
1d: 1-(O-CARBOXY-PHENYLAMINO)-1-DEOXY-... (137d)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
3f: SODIUM ION (NAf)
3g: SODIUM ION (NAg)
3h: SODIUM ION (NAh)
3i: SODIUM ION (NAi)
3j: SODIUM ION (NAj)
3k: SODIUM ION (NAk)
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No.
Name
Count
Type
Full Name
1
137
1
Ligand/Ion
1-(O-CARBOXY-PHENYLAMINO)-1-DEOXY-D-RIBULOSE-5-PHOSPHATE
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
NA
-1
Ligand/Ion
SODIUM ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:201 , GLY A:202 , VAL A:203 , ILE A:224 , 137 A:1247
BINDING SITE FOR RESIDUE NA A1245
2
AC2
SOFTWARE
GLY A:82 , GLY A:83 , ILE A:84 , ASN A:102 , GLY A:104
BINDING SITE FOR RESIDUE CL A1246
3
AC3
SOFTWARE
ALA A:9 , ASP A:11 , HIS A:50 , VAL A:52 , LEU A:54 , ALA A:57 , SER A:81 , ARG A:143 , ASP A:175 , GLY A:176 , SER A:200 , GLY A:201 , GLY A:202 , GLY A:226 , LYS A:227 , NA A:1245 , HOH A:2033 , HOH A:2034 , HOH A:2035 , HOH A:2036
BINDING SITE FOR RESIDUE 137 A1247
4
AC4
SOFTWARE
LEU A:129 , ASP A:130 , ARG A:143 , VAL A:168 , THR A:170
BINDING SITE FOR RESIDUE NA A1248
5
AC5
SOFTWARE
ILE A:172 , THR A:173 , ASP A:175 , THR A:177 , GLN B:132
BINDING SITE FOR RESIDUE NA A1249
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2y85a_ (A:)
1b: SCOP_d2y85b_ (B:)
1c: SCOP_d2y85c_ (C:)
1d: SCOP_d2y85d_ (D:)
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Protein Domains
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Ribulose-phoshate binding barrel
(356)
Family
:
Histidine biosynthesis enzymes
(24)
Protein domain
:
automated matches
(11)
Mycobacterium tuberculosis [TaxId: 83332]
(4)
1a
d2y85a_
A:
1b
d2y85b_
B:
1c
d2y85c_
C:
1d
d2y85d_
D:
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CATH Domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_His_biosynth_2y85D01 (D:5-235)
1b: PFAM_His_biosynth_2y85D02 (D:5-235)
1c: PFAM_His_biosynth_2y85D03 (D:5-235)
1d: PFAM_His_biosynth_2y85D04 (D:5-235)
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Clan
:
TIM_barrel
(694)
Family
:
His_biosynth
(16)
Mycobacterium tuberculosis
(3)
1a
His_biosynth-2y85D01
D:5-235
1b
His_biosynth-2y85D02
D:5-235
1c
His_biosynth-2y85D03
D:5-235
1d
His_biosynth-2y85D04
D:5-235
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Chain A
Asymmetric Unit 1
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Asym.Unit (300 KB)
Header - Asym.Unit
Biol.Unit 1 (77 KB)
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Biol.Unit 2 (77 KB)
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Biol.Unit 3 (76 KB)
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Biol.Unit 4 (77 KB)
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