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Getting 'Exon' information from database.
2Y7Q
Asym. Unit
Info
Asym.Unit (109 KB)
Biol.Unit 1 (100 KB)
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(1)
Title
:
THE HIGH-AFFINITY COMPLEX BETWEEN IGE AND ITS RECEPTOR FC EPSILON RI
Authors
:
A. M. Davies, M. D. Holdom, J. E. Nettleship, A. J. Beavil, R. J. Owens, B.
Date
:
01 Feb 11 (Deposition) - 20 Apr 11 (Release) - 18 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.40
Chains
:
Asym. Unit : A,B,D
Biol. Unit 1: A,B,D (1x)
Keywords
:
Allergy, Antibody, Ige-Binding Protein, High-Affinity Receptor, Immunoglobulin C Region, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. D. Holdom, A. M. Davies, J. E. Nettleship, S. C. Bagby, B. Dhaliwal, E. Girardi, J. Hunt, H. J. Gould, A. J. Beavil, J. M. Mcdonnell, R. J. Owens, B. J. Sutton
Conformational Changes In Ige Contribute To Its Uniquely Slow Dissociation Rate From Receptor Fceri
Nat. Struct. Mol. Biol. V. 18 571 2011
(for further references see the
PDB file header
)
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: ALPHA-D-MANNOSE (MANa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:21 , GLY B:318 , HIS B:319 , THR B:320
BINDING SITE FOR RESIDUE NAG A1174
2
AC2
SOFTWARE
ASP B:362 , GLN B:392 , ASN B:394 , THR B:396
BINDING SITE FOR RESIDUE NAG B1543
3
AC3
SOFTWARE
ASP D:271 , ASP D:362 , GLN D:392 , ASN D:394 , THR D:396
BINDING SITE FOR RESIDUE NAG D1543
4
AC4
SOFTWARE
HIS A:41 , ASN A:42 , PHE A:60 , GLU A:61 , SER A:63 , HIS B:384 , THR B:386 , ARG B:387 , LYS B:388 , GLU B:389
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 42 RESIDUES 1175 TO 1178
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SAPs(SNPs)/Variants
(3, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_020091 (K59R, chain A, )
2: VAR_020092 (S76N, chain A, )
3: VAR_003885 (W478L, chain B/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020091
K
84
R
FCERA_HUMAN
Polymorphism
2298804
A
K
59
R
2
UniProt
VAR_020092
S
101
N
FCERA_HUMAN
Polymorphism
2298805
A
S
76
N
3
UniProt
VAR_003885
W
359
L
IGHE_HUMAN
Polymorphism
---
B/D
W
478
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (-|B:416-422,D:416-422|B:522-528,D:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGHE_HUMAN
83-89
297-303
403-409
4
-
B:416-422
D:416-422
B:522-528
D:522-528
[
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Exons
(6, 9)
Info
All Exons
Exon 1.4a (A:4-86 (gaps))
Exon 1.5 (A:86-172)
Exon 1.6b (A:172-173)
Exon 2.2 (B:229-330 (gaps) | D:228-329 (gaps...)
Exon 2.3 (B:330-438 | D:332-438)
Exon 2.4 (B:438-542 (gaps) | D:438-542 (gaps...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3/1.4a
2: Boundary 1.4a/1.5
3: Boundary 1.5/1.6b
4: Boundary 1.6b/-
5: Boundary 2.1/2.2
6: Boundary 2.2/2.3
7: Boundary 2.3/2.4
8: Boundary 2.4/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000368115
1
ENSE00001277214
chr1:
159259504-159259543
40
FCERA_HUMAN
-
0
0
-
-
1.2a
ENST00000368115
2a
ENSE00001277230
chr1:
159272096-159272209
114
FCERA_HUMAN
1-19
19
0
-
-
1.3
ENST00000368115
3
ENSE00001067917
chr1:
159272644-159272664
21
FCERA_HUMAN
19-26
8
0
-
-
1.4a
ENST00000368115
4a
ENSE00001067919
chr1:
159273718-159273972
255
FCERA_HUMAN
26-111
86
1
A:4-86 (gaps)
83
1.5
ENST00000368115
5
ENSE00001277186
chr1:
159275778-159276035
258
FCERA_HUMAN
111-197
87
1
A:86-172
87
1.6b
ENST00000368115
6b
ENSE00001446352
chr1:
159277538-159278014
477
FCERA_HUMAN
197-257
61
1
A:172-173
2
2.1
ENST00000390541
1
ENSE00001935719
chr14:
106068065-106067756
310
IGHE_HUMAN
1-104
104
0
-
-
2.2
ENST00000390541
2
ENSE00001508179
chr14:
106067548-106067228
321
IGHE_HUMAN
104-211
108
2
B:229-330 (gaps)
D:228-329 (gaps)
103
103
2.3
ENST00000390541
3
ENSE00001508174
chr14:
106067141-106066818
324
IGHE_HUMAN
211-319
109
2
B:330-438
D:332-438
109
107
2.4
ENST00000390541
4
ENSE00001943927
chr14:
106066734-106066278
457
IGHE_HUMAN
319-428
110
2
B:438-542 (gaps)
D:438-542 (gaps)
105
105
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_C1_set_2y7qD01 (D:450-536)
1b: PFAM_C1_set_2y7qD02 (D:450-536)
1c: PFAM_C1_set_2y7qD03 (D:450-536)
1d: PFAM_C1_set_2y7qD04 (D:450-536)
1e: PFAM_C1_set_2y7qD05 (D:450-536)
1f: PFAM_C1_set_2y7qD06 (D:450-536)
2a: PFAM_Ig_2_2y7qA01 (A:87-169)
2b: PFAM_Ig_2_2y7qA02 (A:87-169)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Homo sapiens (Human)
(218)
1a
C1-set-2y7qD01
D:450-536
1b
C1-set-2y7qD02
D:450-536
1c
C1-set-2y7qD03
D:450-536
1d
C1-set-2y7qD04
D:450-536
1e
C1-set-2y7qD05
D:450-536
1f
C1-set-2y7qD06
D:450-536
Family
:
Ig_2
(52)
Homo sapiens (Human)
(39)
2a
Ig_2-2y7qA01
A:87-169
2b
Ig_2-2y7qA02
A:87-169
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Protein & NOT PROSITE
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Chain D
Asymmetric Unit 1
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