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2Y5Z
Asym. Unit
Info
Asym.Unit (438 KB)
Biol.Unit 1 (146 KB)
Biol.Unit 2 (147 KB)
Biol.Unit 3 (146 KB)
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(1)
Title
:
MIXED-FUNCTION P450 MYCG IN COMPLEX WITH MYCINAMICIN III IN C2221 SPACE GROUP
Authors
:
S. Li, P. M. Kells, D. H. Sherman, L. M. Podust
Date
:
19 Jan 11 (Deposition) - 01 Feb 12 (Release) - 14 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.06
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Oxidoreductase, Mycinamicin Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Li, D. R. Tietz, F. U. Rutaganira, P. M. Kells, Y. Anzai, F. Kato, T. C. Pochapsky, D. H. Sherman, L. M. Podust
Substrate Recognition By The Multifunctional Cytochrome P450 Mycg In Mycinamicin Hydroxylation And Epoxidation Reactions.
J. Biol. Chem. V. 287 37880 2012
[
close entry info
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Hetero Components
(4, 19)
Info
All Hetero Components
1a: BENZAMIDINE (BENa)
1b: BENZAMIDINE (BENb)
1c: BENZAMIDINE (BENc)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
4a: MYCINAMICIN III (ZM3a)
4b: MYCINAMICIN III (ZM3b)
4c: MYCINAMICIN III (ZM3c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BEN
3
Ligand/Ion
BENZAMIDINE
2
GOL
10
Ligand/Ion
GLYCEROL
3
HEM
3
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
ZM3
3
Ligand/Ion
MYCINAMICIN III
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:83 , LEU A:84 , HIS A:91 , ARG A:95 , PHE A:102 , LEU A:231 , ALA A:234 , GLY A:235 , SER A:238 , THR A:239 , PHE A:286 , ARG A:288 , GLY A:338 , PHE A:339 , GLY A:340 , HIS A:344 , CYS A:346 , GLY A:348 , LEU A:356 , HOH A:2162 , HOH A:2257 , HOH A:2258
BINDING SITE FOR RESIDUE HEM A 450
02
AC2
SOFTWARE
ARG A:75 , GLU A:77 , VAL A:79 , PHE A:168 , SER A:170 , VAL A:174 , MET A:179 , LEU A:386 , HOH A:2260
BINDING SITE FOR RESIDUE ZM3 A 460
03
AC3
SOFTWARE
HIS A:119 , ARG A:366 , HOH A:2261 , HOH A:2262 , HIS B:119 , ARG B:366 , BEN B:1398 , HOH B:2264
BINDING SITE FOR RESIDUE BEN A1398
04
AC4
SOFTWARE
ARG A:140 , THR A:240 , THR A:241 , GLY A:389 , PRO A:390 , HOH A:2263
BINDING SITE FOR RESIDUE GOL A1399
05
AC5
SOFTWARE
LEU A:56 , GLY A:57 , GLY A:59 , PRO A:88 , GLY A:342 , VAL A:343 , HOH A:2093 , HOH A:2264 , ASP C:325 , HOH C:2207
BINDING SITE FOR RESIDUE GOL A1400
06
AC6
SOFTWARE
ARG A:73 , THR A:74 , VAL A:282 , GLY A:283 , THR A:284 , LEU A:386 , HOH A:2082
BINDING SITE FOR RESIDUE GOL A1401
07
AC7
SOFTWARE
GLN A:318 , ALA A:319 , PHE A:321 , PRO A:322 , HOH A:2265 , PRO C:89 , SER C:92 , ARG C:93 , ARG C:96
BINDING SITE FOR RESIDUE GOL A1402
08
AC8
SOFTWARE
LEU B:83 , LEU B:84 , HIS B:91 , ARG B:95 , PHE B:102 , ALA B:234 , GLY B:235 , SER B:238 , THR B:239 , PHE B:286 , ARG B:288 , GLY B:338 , PHE B:339 , GLY B:340 , HIS B:344 , CYS B:346 , GLY B:348 , HOH B:2153 , HOH B:2192 , HOH B:2262 , HOH B:2263
BINDING SITE FOR RESIDUE HEM B 450
09
AC9
SOFTWARE
ARG B:75 , GLU B:77 , VAL B:79 , VAL B:174 , ALA B:176 , MET B:179 , LEU B:386
BINDING SITE FOR RESIDUE ZM3 B 460
10
BC1
SOFTWARE
HIS A:119 , ARG A:366 , BEN A:1398 , HOH A:2261 , HOH A:2262 , HIS B:119 , ARG B:366 , HOH B:2264
BINDING SITE FOR RESIDUE BEN B1398
11
BC2
SOFTWARE
LEU B:56 , GLY B:57 , GLY B:59 , PHE B:61 , PRO B:88 , ASP B:325 , GLY B:342 , VAL B:343 , HOH B:2088 , HOH B:2209 , HOH B:2265
BINDING SITE FOR RESIDUE GOL B1399
12
BC3
SOFTWARE
ARG B:140 , THR B:240 , THR B:241 , ALA B:244 , GLY B:389 , PRO B:390 , LEU B:391 , HOH B:2139 , HOH B:2154
BINDING SITE FOR RESIDUE GOL B1400
13
BC4
SOFTWARE
GLN B:27 , ARG B:48 , ARG B:96 , ASP B:317 , HOH B:2030 , HOH B:2266
BINDING SITE FOR RESIDUE GOL B1401
14
BC5
SOFTWARE
PRO B:65 , ALA B:290 , VAL B:291
BINDING SITE FOR RESIDUE GOL B1402
15
BC6
SOFTWARE
LEU C:83 , LEU C:84 , HIS C:91 , ARG C:95 , PHE C:102 , LEU C:231 , ALA C:234 , GLY C:235 , SER C:238 , THR C:239 , PHE C:286 , ARG C:288 , GLY C:338 , PHE C:339 , GLY C:340 , HIS C:344 , CYS C:346 , GLY C:348 , ALA C:352 , HOH C:2149 , HOH C:2256
BINDING SITE FOR RESIDUE HEM C 450
16
BC7
SOFTWARE
GLU C:77 , VAL C:79 , SER C:170 , VAL C:174 , ALA C:176 , MET C:179 , LEU C:386
BINDING SITE FOR RESIDUE ZM3 C 460
17
BC8
SOFTWARE
HIS C:119 , ARG C:366 , HOH C:2257 , HOH C:2258
BINDING SITE FOR RESIDUE BEN C1398
18
BC9
SOFTWARE
ASP A:325 , LEU C:56 , GLY C:57 , GLY C:59 , PHE C:61 , PRO C:88 , GLY C:342 , VAL C:343 , HOH C:2079 , HOH C:2259 , HOH C:2260
BINDING SITE FOR RESIDUE GOL C1399
19
CC1
SOFTWARE
ARG C:140 , THR C:240 , THR C:241 , GLY C:389 , PRO C:390 , LEU C:391 , HOH C:2130
BINDING SITE FOR RESIDUE GOL C1400
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (A:339-348,B:339-348,C:339-348)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
MYCG_MICGR
339-348
3
A:339-348
B:339-348
C:339-348
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2y5za_ (A:)
1b: SCOP_d2y5zb_ (B:)
1c: SCOP_d2y5zc_ (C:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
automated matches
(157)
Protein domain
:
automated matches
(157)
Micromonospora griseorubida [TaxId: 28040]
(8)
1a
d2y5za_
A:
1b
d2y5zb_
B:
1c
d2y5zc_
C:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (438 KB)
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