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2Y5P
Asym. Unit
Info
Asym.Unit (126 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (31 KB)
Biol.Unit 3 (32 KB)
Biol.Unit 4 (33 KB)
Biol.Unit 5 (120 KB)
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(1)
Title
:
B-REPEAT OF LISTERIA MONOCYTOGENES INLB (INTERNALIN B)
Authors
:
M. Ebbes, H. H. Niemann
Date
:
17 Jan 11 (Deposition) - 23 Feb 11 (Release) - 10 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B,C,D (1x)
Keywords
:
Protein Binding, Virulence Factor, Pathogenicity Factor, Beta-Grasp Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ebbes, W. M. Bleymuller, M. Cernescu, R. Nolker, B. Brutschy, H. H. Niemann
Fold And Function Of The Inlb B-Repeat.
J. Biol. Chem. V. 286 15496 2011
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
8
Ligand/Ion
CALCIUM ION
2
CL
3
Ligand/Ion
CHLORIDE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:363 , ASN A:365 , HOH A:2052 , HOH A:2092
BINDING SITE FOR RESIDUE CA A1393
02
AC2
SOFTWARE
ASP A:330 , LYS A:358 , LYS A:389 , HOH A:2088
BINDING SITE FOR RESIDUE CA A1394
03
AC3
SOFTWARE
LYS B:358 , GLU B:369 , HOH B:2048 , HOH B:2052 , HOH B:2073 , HOH B:2092
BINDING SITE FOR RESIDUE CA B1393
04
AC4
SOFTWARE
HOH B:2067 , HOH B:2074 , HOH B:2078 , HOH B:2079 , HOH B:2081 , HOH C:2109 , HOH C:2128
BINDING SITE FOR RESIDUE CA B1394
05
AC5
SOFTWARE
ASP C:381 , HOH C:2104 , HOH C:2105 , HOH C:2113 , HOH C:2114 , HOH C:2129 , HOH C:2130
BINDING SITE FOR RESIDUE CA C1393
06
AC6
SOFTWARE
THR C:342 , ARG C:343 , HOH C:2032 , HOH C:2069
BINDING SITE FOR RESIDUE CL C1394
07
AC7
SOFTWARE
ASN C:380 , ASP C:381 , ALA C:390
BINDING SITE FOR RESIDUE CL C1395
08
AC8
SOFTWARE
HOH B:2019 , GLU C:391 , HOH C:2125 , HOH C:2126 , HOH C:2127
BINDING SITE FOR RESIDUE CA C1396
09
AC9
SOFTWARE
HOH B:2090 , HOH C:2077 , HOH C:2098 , HOH C:2100 , HOH C:2101
BINDING SITE FOR RESIDUE CA C1397
10
BC1
SOFTWARE
LYS D:389 , ALA D:390
BINDING SITE FOR RESIDUE CL D1392
11
BC2
SOFTWARE
HOH B:2027 , ASP D:330 , HOH D:2008
BINDING SITE FOR RESIDUE CA D1393
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Flg_new_2y5pD01 (D:350-391)
1b: PFAM_Flg_new_2y5pD02 (D:350-391)
1c: PFAM_Flg_new_2y5pD03 (D:350-391)
1d: PFAM_Flg_new_2y5pD04 (D:350-391)
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Clans
(
)
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Flg_new]
(1)
Family
:
Flg_new
(1)
Listeria monocytogenes
(1)
1a
Flg_new-2y5pD01
D:350-391
1b
Flg_new-2y5pD02
D:350-391
1c
Flg_new-2y5pD03
D:350-391
1d
Flg_new-2y5pD04
D:350-391
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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show bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (126 KB)
Header - Asym.Unit
Biol.Unit 1 (31 KB)
Header - Biol.Unit 1
Biol.Unit 2 (31 KB)
Header - Biol.Unit 2
Biol.Unit 3 (32 KB)
Header - Biol.Unit 3
Biol.Unit 4 (33 KB)
Header - Biol.Unit 4
Biol.Unit 5 (120 KB)
Header - Biol.Unit 5
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