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2Y56
Asym. Unit
Info
Asym.Unit (366 KB)
Biol.Unit 1 (358 KB)
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(1)
Title
:
FRAGMENT GROWING INDUCES CONFORMATIONAL CHANGES IN ACETYLCHOLINE-BINDING PROTEIN: A STRUCTURAL AND THERMODYNAMIC ANALYSIS - (COMPOUND 3)
Authors
:
P. Rucktooa, E. Edink, I. J. P. Deesch, T. K. Sixma
Date
:
12 Jan 11 (Deposition) - 15 Jun 11 (Release) - 15 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.59
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Receptor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Edink, P. Rucktooa, K. Retra, A. Akdemir, T. Nahar, O. Zuiderveld, R. Van Elk, E. Janssen, P. Van Nierop, J. Van Muijlwijk-Koezen, A. B. Smit, T. K. Sixma, R. Leurs, I. J. P. De Esch
Fragment Growing Induces Conformational Changes In Acetylcholine-Binding Protein: A Structural And Thermodynamic Analysis.
J. Am. Chem. Soc. V. 133 5363 2011
[
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Hetero Components
(4, 39)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
4a: [(1S,5R)-8-[(2R)-2-HYDROXY-2-PHENY... (V11a)
4b: [(1S,5R)-8-[(2R)-2-HYDROXY-2-PHENY... (V11b)
4c: [(1S,5R)-8-[(2R)-2-HYDROXY-2-PHENY... (V11c)
4d: [(1S,5R)-8-[(2R)-2-HYDROXY-2-PHENY... (V11d)
4e: [(1S,5R)-8-[(2R)-2-HYDROXY-2-PHENY... (V11e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
12
Ligand/Ion
CHLORIDE ION
2
GOL
8
Ligand/Ion
GLYCEROL
3
SO4
14
Ligand/Ion
SULFATE ION
4
V11
5
Ligand/Ion
[(1S,5R)-8-[(2R)-2-HYDROXY-2-PHENYL-ETHYL]-8-AZABICYCLO[3.2.1]OCTAN-3-YL] BENZOATE
[
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]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:89 , TYR A:91 , LYS A:141 , GLY A:143 , SER A:144 , TRP A:145 , TYR A:186 , CYS A:188 , CYS A:189 , TYR A:193 , CL A:502 , TYR B:53 , GLN B:55 , ILE B:116
BINDING SITE FOR RESIDUE V11 A 301
02
AC2
SOFTWARE
LYS A:40 , ARG E:95
BINDING SITE FOR RESIDUE CL A 501
03
AC3
SOFTWARE
V11 A:301 , ILE B:116
BINDING SITE FOR RESIDUE CL A 502
04
AC4
SOFTWARE
LYS A:141 , GLN A:182 , GLN A:184
BINDING SITE FOR RESIDUE SO4 A 601
05
AC5
SOFTWARE
GLN A:1 , ALA A:2 , ASN A:3
BINDING SITE FOR RESIDUE SO4 A 602
06
AC6
SOFTWARE
THR A:158 , ASP A:159
BINDING SITE FOR RESIDUE GOL A 701
07
AC7
SOFTWARE
ARG A:205
BINDING SITE FOR RESIDUE GOL A 702
08
AC8
SOFTWARE
THR B:89 , TYR B:91 , GLY B:143 , SER B:144 , TRP B:145 , TYR B:186 , CYS B:188 , CYS B:189 , TYR B:193 , GLN C:55 , ILE C:116
BINDING SITE FOR RESIDUE V11 B 301
09
AC9
SOFTWARE
LYS B:40
BINDING SITE FOR RESIDUE CL B 501
10
BC1
SOFTWARE
ILE C:116
BINDING SITE FOR RESIDUE CL B 502
11
BC2
SOFTWARE
TYR B:147
BINDING SITE FOR RESIDUE CL B 503
12
BC3
SOFTWARE
ASP A:126 , TYR B:167 , SER B:169
BINDING SITE FOR RESIDUE SO4 B 601
13
BC4
SOFTWARE
GLN B:1 , ALA B:2 , ASN B:3
BINDING SITE FOR RESIDUE SO4 B 602
14
BC5
SOFTWARE
TYR B:186 , SER B:187 , CYS B:188 , ASP C:162 , SER C:164 , SER C:165
BINDING SITE FOR RESIDUE GOL B 701
15
BC6
SOFTWARE
THR C:89 , TYR C:91 , LYS C:141 , GLY C:143 , SER C:144 , TRP C:145 , TYR C:186 , CYS C:188 , CYS C:189 , TYR C:193 , CL C:502 , ILE D:116
BINDING SITE FOR RESIDUE V11 C 301
16
BC7
SOFTWARE
ARG B:95 , LYS C:40
BINDING SITE FOR RESIDUE CL C 501
17
BC8
SOFTWARE
V11 C:301 , ILE D:116
BINDING SITE FOR RESIDUE CL C 502
18
BC9
SOFTWARE
GLN C:1 , ALA C:2 , ASN C:3
BINDING SITE FOR RESIDUE SO4 C 601
19
CC1
SOFTWARE
ASP C:25 , LYS C:59 , LEU C:60 , ASN C:61
BINDING SITE FOR RESIDUE SO4 C 602
20
CC2
SOFTWARE
TYR C:186 , SER C:187 , CYS C:188 , TYR D:53 , ASP D:162 , SER D:164 , SER D:165
BINDING SITE FOR RESIDUE GOL C 701
21
CC3
SOFTWARE
SER C:93 , ARG C:95 , PRO C:96 , VAL C:97 , LEU D:100
BINDING SITE FOR RESIDUE GOL C 702
22
CC4
SOFTWARE
THR D:89 , TYR D:91 , GLY D:143 , SER D:144 , TRP D:145 , TYR D:186 , CYS D:188 , CYS D:189 , TYR D:193 , CL D:503 , GLN E:55 , ILE E:116
BINDING SITE FOR RESIDUE V11 D 301
23
CC5
SOFTWARE
ARG C:95 , LYS D:40
BINDING SITE FOR RESIDUE CL D 501
24
CC6
SOFTWARE
SER D:165
BINDING SITE FOR RESIDUE CL D 502
25
CC7
SOFTWARE
V11 D:301 , ILE E:116
BINDING SITE FOR RESIDUE CL D 503
26
CC8
SOFTWARE
HIS B:185 , ASP C:126 , TYR D:167 , SER D:169
BINDING SITE FOR RESIDUE SO4 D 601
27
CC9
SOFTWARE
LYS D:141 , GLN D:182 , ASN D:197
BINDING SITE FOR RESIDUE SO4 D 602
28
DC1
SOFTWARE
GLN D:1 , ALA D:2 , ASN D:3
BINDING SITE FOR RESIDUE SO4 D 603
29
DC2
SOFTWARE
ASP D:157 , THR D:158 , ASP D:159
BINDING SITE FOR RESIDUE GOL D 701
30
DC3
SOFTWARE
MET D:17 , ILE D:83 , TRP D:84 , THR D:85
BINDING SITE FOR RESIDUE GOL D 702
31
DC4
SOFTWARE
SER D:79 , PRO D:102 , GLN D:103
BINDING SITE FOR RESIDUE GOL D 703
32
DC5
SOFTWARE
ILE A:116 , THR E:89 , TYR E:91 , LYS E:141 , GLY E:143 , SER E:144 , TRP E:145 , TYR E:186 , CYS E:188 , TYR E:193 , CL E:502
BINDING SITE FOR RESIDUE V11 E 301
33
DC6
SOFTWARE
LYS E:40
BINDING SITE FOR RESIDUE CL E 501
34
DC7
SOFTWARE
ILE A:116 , V11 E:301
BINDING SITE FOR RESIDUE CL E 502
35
DC8
SOFTWARE
LYS E:141 , GLN E:182 , ASN E:197
BINDING SITE FOR RESIDUE SO4 E 601
36
DC9
SOFTWARE
ASP D:126 , TYR E:167 , SER E:169
BINDING SITE FOR RESIDUE SO4 E 602
37
EC1
SOFTWARE
GLN E:1 , ALA E:2 , ASN E:3
BINDING SITE FOR RESIDUE SO4 E 603
38
EC2
SOFTWARE
TYR D:91 , SER D:92 , GLN E:36 , SER E:165 , TYR E:167
BINDING SITE FOR RESIDUE SO4 E 604
39
EC3
SOFTWARE
TYR A:167 , SER A:169 , ASP E:126
BINDING SITE FOR RESIDUE SO4 E 605
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_Neur_chan_LBD_2y56E01 (E:4-205)
1b: PFAM_Neur_chan_LBD_2y56E02 (E:4-205)
1c: PFAM_Neur_chan_LBD_2y56E03 (E:4-205)
1d: PFAM_Neur_chan_LBD_2y56E04 (E:4-205)
1e: PFAM_Neur_chan_LBD_2y56E05 (E:4-205)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Neur_chan_LBD]
(30)
Family
:
Neur_chan_LBD
(30)
Aplysia californica (California sea hare)
(19)
1a
Neur_chan_LBD-2y56E01
E:4-205
1b
Neur_chan_LBD-2y56E02
E:4-205
1c
Neur_chan_LBD-2y56E03
E:4-205
1d
Neur_chan_LBD-2y56E04
E:4-205
1e
Neur_chan_LBD-2y56E05
E:4-205
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Asym.Unit (366 KB)
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