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2Y54
Asym. Unit
Info
Asym.Unit (359 KB)
Biol.Unit 1 (352 KB)
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(1)
Title
:
FRAGMENT GROWING INDUCES CONFORMATIONAL CHANGES IN ACETYLCHOLINE-BINDING PROTEIN: A STRUCTURAL AND THERMODYNAMIC ANALYSIS - (FRAGMENT 1)
Authors
:
P. Rucktooa, E. Edink, I. J. P. Deesch, T. K. Sixma
Date
:
12 Jan 11 (Deposition) - 15 Jun 11 (Release) - 15 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.65
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Receptor
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
E. Edink, P. Rucktooa, K. Retra, A. Akdemir, T. Nahar, O. Zuiderveld, R. Van Elk, E. Janssen, P. Van Nierop, J. Van Muijlwijk-Koezen, A. B. Smit, T. K. Sixma, R. Leurs, I. J. P. De Esch
Fragment Growing Induces Conformational Changes In Acetylcholine-Binding Protein: A Structural And Thermodynamic Analysis.
J. Am. Chem. Soc. V. 133 5363 2011
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
3a: [(1R,5S)-8-AZABICYCLO[3.2.1]OCTAN-... (V63a)
3b: [(1R,5S)-8-AZABICYCLO[3.2.1]OCTAN-... (V63b)
3c: [(1R,5S)-8-AZABICYCLO[3.2.1]OCTAN-... (V63c)
3d: [(1R,5S)-8-AZABICYCLO[3.2.1]OCTAN-... (V63d)
3e: [(1R,5S)-8-AZABICYCLO[3.2.1]OCTAN-... (V63e)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
6
Ligand/Ion
CHLORIDE ION
2
SO4
2
Ligand/Ion
SULFATE ION
3
V63
5
Ligand/Ion
[(1R,5S)-8-AZABICYCLO[3.2.1]OCTAN-3-YL] BENZOATE
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:91 , TRP A:145 , CYS A:188 , CYS A:189 , TYR A:193 , GLN B:55 , ILE B:116
BINDING SITE FOR RESIDUE V63 A 301
02
AC2
SOFTWARE
GLN A:1 , ALA A:2 , ASN A:3
BINDING SITE FOR RESIDUE SO4 A 601
03
AC3
SOFTWARE
GLN A:103
BINDING SITE FOR RESIDUE CL A 701
04
AC4
SOFTWARE
TYR B:91 , TRP B:145 , CYS B:188 , ILE C:116
BINDING SITE FOR RESIDUE V63 B 301
05
AC5
SOFTWARE
VAL B:183 , HIS B:185 , CYS C:125 , ASP C:126 , TYR D:167 , SER D:169
BINDING SITE FOR RESIDUE SO4 B 601
06
AC6
SOFTWARE
GLN B:103
BINDING SITE FOR RESIDUE CL B 701
07
AC7
SOFTWARE
TYR B:167 , SER B:169
BINDING SITE FOR RESIDUE CL B 702
08
AC8
SOFTWARE
TYR C:91 , TRP C:145 , TYR C:186 , CYS C:188 , TYR C:193 , GLN D:55 , ILE D:116
BINDING SITE FOR RESIDUE V63 C 301
09
AC9
SOFTWARE
GLN C:103
BINDING SITE FOR RESIDUE CL C 701
10
BC1
SOFTWARE
TYR D:91 , TRP D:145 , CYS D:188 , CYS D:189 , TYR D:193 , GLN E:55 , ILE E:116
BINDING SITE FOR RESIDUE V63 D 301
11
BC2
SOFTWARE
PRO D:102 , GLN D:103
BINDING SITE FOR RESIDUE CL D 701
12
BC3
SOFTWARE
GLN A:55 , ILE A:116 , TYR E:91 , TRP E:145 , CYS E:188 , CYS E:189
BINDING SITE FOR RESIDUE V63 E 301
13
BC4
SOFTWARE
GLN E:103
BINDING SITE FOR RESIDUE CL E 701
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_Neur_chan_LBD_2y54E01 (E:4-205)
1b: PFAM_Neur_chan_LBD_2y54E02 (E:4-205)
1c: PFAM_Neur_chan_LBD_2y54E03 (E:4-205)
1d: PFAM_Neur_chan_LBD_2y54E04 (E:4-205)
1e: PFAM_Neur_chan_LBD_2y54E05 (E:4-205)
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Clans
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(
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Organisms
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)
(
)
Clan
:
no clan defined [family: Neur_chan_LBD]
(30)
Family
:
Neur_chan_LBD
(30)
Aplysia californica (California sea hare)
(19)
1a
Neur_chan_LBD-2y54E01
E:4-205
1b
Neur_chan_LBD-2y54E02
E:4-205
1c
Neur_chan_LBD-2y54E03
E:4-205
1d
Neur_chan_LBD-2y54E04
E:4-205
1e
Neur_chan_LBD-2y54E05
E:4-205
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Asymmetric Unit 1
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Asym.Unit (359 KB)
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