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2Y4W
Asym. Unit
Info
Asym.Unit (865 KB)
Biol.Unit 1 (44 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF HUMAN UBIQUITIN CONJUGATING ENZYME RAD6B
Authors
:
A. Huang, R. G. Hibbert, R. N. Dejong, D. Das, T. K. Sixma, R. Boelens
Date
:
11 Jan 11 (Deposition) - 11 May 11 (Release) - 27 Jun 12 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Biol. Unit 1: A (1x)
Keywords
:
Ligase, Dna Damage, Dna Repair, Ubiquitination
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Huang, R. G. Hibbert, R. N. Dejong, D. Das, T. K. Sixma, R. Boelens
Symmetry And Asymmetry Of The Ring-Ring Dimer Of Rad18
J. Mol. Biol. V. 410 424 2011
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_CONJUGAT_2 (A:7-139)
2: UBIQUITIN_CONJUGAT_1 (A:77-92)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_CONJUGAT_2
PS50127
Ubiquitin-conjugating enzymes family profile.
UBE2B_HUMAN
7-139
1
A:7-139
2
UBIQUITIN_CONJUGAT_1
PS00183
Ubiquitin-conjugating enzymes active site.
UBE2B_HUMAN
77-92
1
A:77-92
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Exons
(6, 6)
Info
All Exons
Exon 1.1a (A:1-15)
Exon 1.2a (A:15-42)
Exon 1.3 (A:42-51)
Exon 1.4 (A:51-81)
Exon 1.6b (A:81-110)
Exon 1.8g (A:111-152)
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1: Boundary -/1.1a
2: Boundary 1.1a/1.2a
3: Boundary 1.2a/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.6b
6: Boundary 1.6b/1.8g
7: Boundary 1.8g/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000265339
1a
ENSE00001042376
chr5:
133706870-133707330
461
UBE2B_HUMAN
1-15
15
1
A:1-15
15
1.2a
ENST00000265339
2a
ENSE00000953701
chr5:
133710074-133710154
81
UBE2B_HUMAN
15-42
28
1
A:15-42
28
1.3
ENST00000265339
3
ENSE00001042373
chr5:
133712360-133712385
26
UBE2B_HUMAN
42-51
10
1
A:42-51
10
1.4
ENST00000265339
4
ENSE00000803566
chr5:
133716410-133716499
90
UBE2B_HUMAN
51-81
31
1
A:51-81
31
1.6b
ENST00000265339
6b
ENSE00000763369
chr5:
133724016-133724104
89
UBE2B_HUMAN
81-110
30
1
A:81-110
30
1.8g
ENST00000265339
8g
ENSE00000803567
chr5:
133725916-133727683
1768
UBE2B_HUMAN
111-152
42
1
A:111-152
42
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2y4wa_ (A:)
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Protein Domains
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Organisms
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)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
UBC-like
(176)
Superfamily
:
UBC-like
(176)
Family
:
UBC-related
(135)
Protein domain
:
Ubiquitin conjugating enzyme, UBC
(84)
Human (Homo sapiens), ubc2b [TaxId: 9606]
(4)
1a
d2y4wa_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_UQ_con_2y4wA01 (A:8-145)
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Clans
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Organisms
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)
(
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Clan
:
UBC
(69)
Family
:
UQ_con
(55)
Homo sapiens (Human)
(36)
1a
UQ_con-2y4wA01
A:8-145
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Chain A
Asymmetric Unit 1
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Asym.Unit (865 KB)
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Header - Biol.Unit 1
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