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2Y4O
Asym. Unit
Info
Asym.Unit (161 KB)
Biol.Unit 1 (154 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PAAK2 IN COMPLEX WITH PHENYLACETYL ADENYLATE
Authors
:
A. Law, M. J. Boulanger
Date
:
07 Jan 11 (Deposition) - 09 Mar 11 (Release) - 04 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ligase, Phenylacetic Acid Degradation Pathway
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Law, M. J. Boulanger
Defining A Structural And Kinetic Rationale For Paralogous Copies Of Phenylacetate-Coa Ligases From The Cystic Fibrosis Pathogen Burkholderia Cenocepacia J2315.
J. Biol. Chem. V. 286 15577 2011
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Hetero Components
(5, 12)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
2a: 5'-O-[HYDROXY(PHENYLACETYL)PHOSPHO... (DLLa)
2b: 5'-O-[HYDROXY(PHENYLACETYL)PHOSPHO... (DLLb)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
5e: DI(HYDROXYETHYL)ETHER (PEGe)
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Label:
No.
Name
Count
Type
Full Name
1
BME
1
Ligand/Ion
BETA-MERCAPTOETHANOL
2
DLL
2
Ligand/Ion
5'-O-[HYDROXY(PHENYLACETYL)PHOSPHORYL]ADENOSINE
3
K
2
Ligand/Ion
POTASSIUM ION
4
MG
2
Ligand/Ion
MAGNESIUM ION
5
PEG
5
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE B:140 , PHE B:145 , THR B:146 , GLY B:147 , ALA B:218 , GLU B:219 , PRO B:220 , ASP B:239 , ILE B:240 , TYR B:241 , GLY B:242 , LEU B:243 , SER B:244 , PRO B:249 , ASP B:309 , ARG B:330 , ILE B:336 , ASN B:341 , K B:1446 , HOH B:2329 , HOH B:2471 , HOH B:2472 , HOH B:2473
BINDING SITE FOR RESIDUE DLL B1438
02
AC2
SOFTWARE
ARG A:157 , HOH A:2192 , HOH B:2474 , HOH B:2475
BINDING SITE FOR RESIDUE PEG B1439
03
AC3
SOFTWARE
ARG A:45 , ASP A:49 , TYR B:38 , ARG B:45 , ASP B:49 , HOH B:2476
BINDING SITE FOR RESIDUE PEG B1440
04
AC4
SOFTWARE
ALA B:65 , PHE B:67 , PRO B:68
BINDING SITE FOR RESIDUE PEG B1441
05
AC5
SOFTWARE
HIS B:43 , ARG B:46 , ASN B:78
BINDING SITE FOR RESIDUE PEG B1442
06
AC6
SOFTWARE
TRP B:221 , THR B:222 , GLN B:223 , ARG B:226 , ASP B:239 , LYS B:326 , HOH B:2315 , HOH B:2330 , HOH B:2395
BINDING SITE FOR RESIDUE PEG B1443
07
AC7
SOFTWARE
GLN B:23 , GLN B:26 , GLU B:266 , ARG B:322 , HOH B:2083 , HOH B:2477
BINDING SITE FOR RESIDUE BME B1444
08
AC8
SOFTWARE
ALA A:207 , SER A:209 , LEU A:211 , VAL A:233 , HOH A:2244 , HOH A:2264
BINDING SITE FOR RESIDUE MG A1439
09
AC9
SOFTWARE
ALA B:207 , SER B:209 , LEU B:211 , VAL B:233 , HOH B:2303 , HOH B:2306
BINDING SITE FOR RESIDUE MG B1445
10
BC1
SOFTWARE
ALA A:218 , GLY A:339 , ASN A:341 , DLL A:1441
BINDING SITE FOR RESIDUE K A1440
11
BC2
SOFTWARE
ALA B:218 , GLY B:339 , ASN B:341 , DLL B:1438
BINDING SITE FOR RESIDUE K B1446
12
BC3
SOFTWARE
PHE A:140 , PHE A:145 , THR A:146 , GLY A:147 , ALA A:218 , GLU A:219 , PRO A:220 , ASP A:239 , ILE A:240 , TYR A:241 , GLY A:242 , LEU A:243 , SER A:244 , ASP A:309 , ARG A:330 , ILE A:336 , ASN A:341 , K A:1440 , HOH A:2139 , HOH A:2380 , HOH A:2381 , HOH A:2382 , HOH A:2383
BINDING SITE FOR RESIDUE DLL A1441
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_AMP_binding_2y4oB01 (B:76-359)
1b: PFAM_AMP_binding_2y4oB02 (B:76-359)
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Clan
:
ANL
(32)
Family
:
AMP-binding
(32)
Burkholderia cepacia (strain J2315 / LMG 16656) (Burkholderia cenocepacia (strain J2315))
(3)
1a
AMP-binding-2y4oB01
B:76-359
1b
AMP-binding-2y4oB02
B:76-359
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Asymmetric Unit 1
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