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2Y4F
Asym. Unit
Info
Asym.Unit (133 KB)
Biol.Unit 1 (128 KB)
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(1)
Title
:
X-RAY CRYSTALLOGRAPHIC STRUCTURE OF E. COLI HEME-EFEB
Authors
:
V. A. Bamford, S. C. Andrews, K. A. Watson
Date
:
05 Jan 11 (Deposition) - 26 Jan 11 (Release) - 26 Jan 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Iron Uptake, Oxidoreductase, Dyp-Peroxidase-Like, Deferrochelatase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. A. Bamford, S. C. Andrews, K. A. Watson
Efeb, The Peroxidase Component Of The Efeuob Bacterial Fe(Ii) Transport System, Also Shows Novel Removal Of Iron From Heme
To Be Published
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
SO4
10
Ligand/Ion
SULFATE ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:194 , LEU A:196 , LYS A:199 , ASP A:200 , GLY A:201 , THR A:202 , ALA A:203 , ILE A:240 , PHE A:242 , PHE A:259 , HIS A:294 , ILE A:295 , ASN A:299 , ARG A:301 , MET A:310 , ARG A:312 , LEU A:331 , PHE A:333 , PHE A:344 , GLN A:348 , LEU A:351 , HOH A:2076 , HOH A:2103 , HOH A:2104
BINDING SITE FOR RESIDUE HEM A 389
02
AC2
SOFTWARE
LEU A:137 , ARG A:175 , HOH A:2049 , HOH A:2050 , HOH A:2105 , GLY B:320 , VAL B:321
BINDING SITE FOR RESIDUE SO4 A 400
03
AC3
SOFTWARE
ARG A:243 , LYS A:361
BINDING SITE FOR RESIDUE SO4 A 401
04
AC4
SOFTWARE
GLN A:241 , THR A:322 , ASN A:323
BINDING SITE FOR RESIDUE SO4 A 402
05
AC5
SOFTWARE
ARG A:15 , ASN A:16 , THR A:126 , ARG A:127 , HOH A:2106
BINDING SITE FOR RESIDUE SO4 A 403
06
AC6
SOFTWARE
ARG A:172
BINDING SITE FOR RESIDUE SO4 A 404
07
AC7
SOFTWARE
LYS A:120 , HOH A:2107 , ASP B:222
BINDING SITE FOR RESIDUE SO4 A 405
08
AC8
SOFTWARE
HIS A:105 , SER A:106 , LYS A:124
BINDING SITE FOR RESIDUE SO4 A 406
09
AC9
SOFTWARE
ALA A:136 , HOH A:2109 , ASN B:323
BINDING SITE FOR RESIDUE GOL A 407
10
BC1
SOFTWARE
ASN B:194 , LYS B:199 , ASP B:200 , GLY B:201 , THR B:202 , ALA B:203 , PHE B:259 , HIS B:294 , ILE B:295 , ASN B:299 , ARG B:301 , ARG B:312 , PHE B:333 , VAL B:347 , GLN B:348 , LEU B:351 , HOH B:2090
BINDING SITE FOR RESIDUE HEM B 389
11
BC2
SOFTWARE
GLY A:320 , VAL A:321 , HOH A:2092 , LEU B:137 , ARG B:175 , HOH B:2042
BINDING SITE FOR RESIDUE SO4 B 400
12
BC3
SOFTWARE
ARG B:172 , HOH B:2091
BINDING SITE FOR RESIDUE SO4 B 401
13
BC4
SOFTWARE
ARG B:243 , LYS B:361 , HOH B:2092 , HOH B:2093
BINDING SITE FOR RESIDUE SO4 B 402
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: DYP_PEROXIDASE (A:23-380,B:23-380)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DYP_PEROXIDASE
PS51404
DyP-type peroxidase family.
EFEB_ECOLI
58-415
2
A:23-380
B:23-380
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (133 KB)
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