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2Y4D
Asym. Unit
Info
Asym.Unit (142 KB)
Biol.Unit 1 (136 KB)
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(1)
Title
:
X-RAY CRYSTALLOGRAPHIC STRUCTURE OF E. COLI APO-EFEB
Authors
:
V. A. Bamford, S. C. Andrews, K. A. Watson
Date
:
05 Jan 11 (Deposition) - 26 Jan 11 (Release) - 26 Jan 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Iron Uptake, Oxidoreductase, Dyp-Peroxidase-Like, Deferrochelatase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. A. Bamford, S. C. Andrews, K. A. Watson
Efeb, The Peroxidase Component Of The Efeuob Bacterial Fe(Ii) Transport System, Also Shows Novel Removal Of Iron From Heme
To Be Published
[
close entry info
]
Hetero Components
(4, 23)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: TETRAETHYLENE GLYCOL (PG4a)
3b: TETRAETHYLENE GLYCOL (PG4b)
3c: TETRAETHYLENE GLYCOL (PG4c)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
GOL
6
Ligand/Ion
GLYCEROL
3
PG4
3
Ligand/Ion
TETRAETHYLENE GLYCOL
4
SO4
13
Ligand/Ion
SULFATE ION
[
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:203 , ARG A:261 , ARG A:312 , HOH A:2297 , HOH A:2298
BINDING SITE FOR RESIDUE SO4 A1389
02
AC2
SOFTWARE
ARG A:243 , LYS A:361 , HOH A:2299
BINDING SITE FOR RESIDUE SO4 A1390
03
AC3
SOFTWARE
ARG A:175 , HOH A:2301 , HOH A:2303 , GLY B:320 , VAL B:321 , HOH B:2220
BINDING SITE FOR RESIDUE SO4 A1391
04
AC4
SOFTWARE
HIS A:105 , SER A:106 , LYS A:124 , HOH A:2304 , HOH A:2305 , HOH A:2306
BINDING SITE FOR RESIDUE SO4 A1392
05
AC5
SOFTWARE
ARG A:15 , ASN A:16 , THR A:126 , ARG A:127 , HOH A:2007 , HOH A:2129 , HOH A:2307
BINDING SITE FOR RESIDUE SO4 A1393
06
AC6
SOFTWARE
GLN A:241 , THR A:322 , ASN A:323 , HOH A:2257 , HOH A:2308 , HOH A:2309 , HOH A:2310 , HOH A:2311
BINDING SITE FOR RESIDUE SO4 A1394
07
AC7
SOFTWARE
GLU A:17 , ALA A:135 , ALA A:136 , ARG A:172 , LYS A:187 , HOH A:2312 , ASN B:323
BINDING SITE FOR RESIDUE PG4 A1395
08
AC8
SOFTWARE
ALA A:298 , ARG A:312 , PHE A:333 , LEU A:351 , HOH A:2263 , HOH A:2315
BINDING SITE FOR RESIDUE PG4 A1396
09
AC9
SOFTWARE
PRO A:32 , GLN A:33 , ALA A:183 , ALA A:184 , LYS A:187 , GLY A:188 , GOL A:1398 , HOH A:2316 , HOH A:2317
BINDING SITE FOR RESIDUE ACT A1397
10
BC1
SOFTWARE
GLN A:19 , THR A:31 , PRO A:32 , ALA A:184 , LYS A:187 , ACT A:1397 , HOH A:2182 , HOH A:2318
BINDING SITE FOR RESIDUE GOL A1398
11
BC2
SOFTWARE
ALA A:72 , PRO A:73 , GLU A:74 , GLY A:90 , HOH A:2319 , HOH A:2320 , HOH A:2321 , GLN B:264 , HOH B:2185
BINDING SITE FOR RESIDUE GOL A1399
12
BC3
SOFTWARE
HIS A:273 , HIS A:275
BINDING SITE FOR RESIDUE GOL A1400
13
BC4
SOFTWARE
LEU A:83 , HIS A:164 , HOH A:2322
BINDING SITE FOR RESIDUE GOL A1401
14
BC5
SOFTWARE
GLY B:201 , THR B:202 , ALA B:203 , ARG B:261 , ARG B:312 , HOH B:2255
BINDING SITE FOR RESIDUE SO4 B1389
15
BC6
SOFTWARE
ARG B:243 , LYS B:361 , HOH B:2212
BINDING SITE FOR RESIDUE SO4 B1390
16
BC7
SOFTWARE
GLY A:320 , VAL A:321 , ARG B:175 , HOH B:2256
BINDING SITE FOR RESIDUE SO4 B1391
17
BC8
SOFTWARE
HIS B:105 , SER B:106 , LYS B:124 , HOH B:2081 , HOH B:2257 , HOH B:2258
BINDING SITE FOR RESIDUE SO4 B1392
18
BC9
SOFTWARE
LYS A:375 , ARG B:172 , HOH B:2259 , HOH B:2260
BINDING SITE FOR RESIDUE SO4 B1393
19
CC1
SOFTWARE
ARG B:79 , THR B:346 , ARG B:350 , HOH B:2261 , HOH B:2262 , HOH B:2263
BINDING SITE FOR RESIDUE SO4 B1394
20
CC2
SOFTWARE
ARG B:62 , PRO B:73 , LEU B:83 , HIS B:164 , HOH B:2264
BINDING SITE FOR RESIDUE SO4 B1395
21
CC3
SOFTWARE
ILE B:240 , HIS B:294 , MET B:310 , ARG B:312 , PHE B:333 , LEU B:351 , HOH B:2235 , HOH B:2265 , HOH B:2266
BINDING SITE FOR RESIDUE PG4 B1396
22
CC4
SOFTWARE
PHE A:246 , GLU B:285
BINDING SITE FOR RESIDUE GOL B1397
23
CC5
SOFTWARE
GLU B:17 , GLN B:19 , PRO B:32 , ALA B:184 , LYS B:187 , HOH B:2267
BINDING SITE FOR RESIDUE GOL B1398
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: DYP_PEROXIDASE (A:23-380,B:23-380)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DYP_PEROXIDASE
PS51404
DyP-type peroxidase family.
EFEB_ECOLI
58-415
2
A:23-380
B:23-380
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
Nucleic
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (142 KB)
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Biol.Unit 1 (136 KB)
Header - Biol.Unit 1
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