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2Y43
Asym. Unit
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Asym.Unit (67 KB)
Biol.Unit 1 (62 KB)
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(1)
Title
:
RAD18 UBIQUITIN LIGASE RING DOMAIN STRUCTURE
Authors
:
R. G. Hibbert, T. K. Sixma
Date
:
04 Jan 11 (Deposition) - 11 May 11 (Release) - 06 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ligase, Dna Repair, Metal-Binding, Translesion Synthesis, Ubl Conjugation Pathway
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Huang, R. G. Hibbert, R. N. De Jong, D. Das, T. K. Sixma, R. Boelens
Symmetry And Asymmetry Of The Ring-Ring Dimer Of Rad18.
J. Mol. Biol. V. 410 424 2011
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
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No.
Name
Count
Type
Full Name
1
ZN
4
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:41 , HIS A:43 , CYS A:60 , CYS A:63
BINDING SITE FOR RESIDUE ZN A1097
2
AC2
SOFTWARE
CYS A:25 , CYS A:28 , CYS A:46 , CYS A:49
BINDING SITE FOR RESIDUE ZN A1098
3
AC3
SOFTWARE
CYS B:41 , HIS B:43 , CYS B:60 , CYS B:63
BINDING SITE FOR RESIDUE ZN B1096
4
AC4
SOFTWARE
CYS B:25 , CYS B:28 , CYS B:46 , CYS B:49
BINDING SITE FOR RESIDUE ZN B1097
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ZF_RING_2 (A:25-63,B:25-63)
2: ZF_RING_1 (A:41-50,B:41-50)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_RING_2
PS50089
Zinc finger RING-type profile.
RAD18_HUMAN
25-63
2
A:25-63
B:25-63
2
ZF_RING_1
PS00518
Zinc finger RING-type signature.
RAD18_HUMAN
41-50
2
A:41-50
B:41-50
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2y43a_ (A:)
1b: SCOP_d2y43b_ (B:)
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Protein Domains
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Organisms
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Class
:
Small proteins
(3458)
Fold
:
RING/U-box
(48)
Superfamily
:
RING/U-box
(48)
Family
:
automated matches
(6)
Protein domain
:
automated matches
(6)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2y43a_
A:
1b
d2y43b_
B:
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_zf_C3HC4_2_2y43B01 (B:21-65)
1b: PFAM_zf_C3HC4_2_2y43B02 (B:21-65)
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Clan
:
RING
(39)
Family
:
zf-C3HC4_2
(9)
Homo sapiens (Human)
(8)
1a
zf-C3HC4_2-2y43B01
B:21-65
1b
zf-C3HC4_2-2y43B02
B:21-65
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Asymmetric Unit 1
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