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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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2Y2L
Asym. Unit
Info
Asym.Unit (325 KB)
Biol.Unit 1 (317 KB)
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(1)
Title
:
PENICILLIN-BINDING PROTEIN 1B (PBP-1B) IN COMPLEX WITH AN ALKYL BORONATE (E06)
Authors
:
C. Contreras-Martel, A. Amoroso, E. C. Woon, A. Zervosen, S. Inglis, A. O. Verlaine, A. Rydzik, V. Job, A. Luxen, B. Joris, C. J. Schofield, A. D
Date
:
15 Dec 10 (Deposition) - 03 Aug 11 (Release) - 25 Jan 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.07
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transferase, Infection, Cell Wall, Peptidoglycan, Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Contreras-Martel, A. Amoroso, E. C. Woon, A. Zervosen, S. Inglis, A. Martins, O. Verlaine, A. Rydzik, V. Job, A. Luxen, B. Joris, C. J. Schofield, A. Dessen
Structure-Guided Design Of Cell Wall Biosynthesis Inhibitors That Overcome Beta-Lactam Resistance In Staphylococcus Aureus (Mrsa).
Acs Chem. Biol. V. 6 943 2011
[
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Hetero Components
(4, 39)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1aa: CHLORIDE ION (CLaa)
1ab: CHLORIDE ION (CLab)
1ac: CHLORIDE ION (CLac)
1ad: CHLORIDE ION (CLad)
1ae: CHLORIDE ION (CLae)
1af: CHLORIDE ION (CLaf)
1ag: CHLORIDE ION (CLag)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
1q: CHLORIDE ION (CLq)
1r: CHLORIDE ION (CLr)
1s: CHLORIDE ION (CLs)
1t: CHLORIDE ION (CLt)
1u: CHLORIDE ION (CLu)
1v: CHLORIDE ION (CLv)
1w: CHLORIDE ION (CLw)
1x: CHLORIDE ION (CLx)
1y: CHLORIDE ION (CLy)
1z: CHLORIDE ION (CLz)
2a: [(1R)-1-[(2,6-DIFLUOROPHENYL)CARBO... (E06a)
2b: [(1R)-1-[(2,6-DIFLUOROPHENYL)CARBO... (E06b)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
33
Ligand/Ion
CHLORIDE ION
2
E06
2
Ligand/Ion
[(1R)-1-[(2,6-DIFLUOROPHENYL)CARBONYLAMINO]ETHYL]-TRIHYDROXY-BORON
3
NA
2
Ligand/Ion
SODIUM ION
4
SO4
2
Ligand/Ion
SULFATE ION
[
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]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:459 , SER A:460 , TYR A:498 , SER A:516 , ASN A:518 , MET A:556 , GLY A:557 , GLY A:558 , THR A:654 , THR A:655 , NA A:1300 , HOH A:2081 , ASN B:492
BINDING SITE FOR RESIDUE E06 A1000
02
AC2
SOFTWARE
THR A:563 , GLN A:566 , LYS A:583 , HOH A:2114 , HOH A:2247 , HOH A:2248 , HOH A:2249
BINDING SITE FOR RESIDUE SO4 A1100
03
AC3
SOFTWARE
ARG A:529 , HOH A:2122 , ARG B:529
BINDING SITE FOR RESIDUE CL A1200
04
AC4
SOFTWARE
VAL A:535 , LYS A:536 , HOH A:2102
BINDING SITE FOR RESIDUE CL A1201
05
AC5
SOFTWARE
ARG A:627 , LYS A:633
BINDING SITE FOR RESIDUE CL A1202
06
AC6
SOFTWARE
GLU A:727 , LYS A:735
BINDING SITE FOR RESIDUE CL A1208
07
AC7
SOFTWARE
GLU A:545 , VAL A:562 , HOH A:2114
BINDING SITE FOR RESIDUE CL A1211
08
AC8
SOFTWARE
VAL A:585 , ILE A:586 , HOH A:2007
BINDING SITE FOR RESIDUE CL A1212
09
AC9
SOFTWARE
ASP A:337 , TYR A:338 , LEU A:339 , HIS A:399 , GLN A:403
BINDING SITE FOR RESIDUE CL A1213
10
BC1
SOFTWARE
LYS A:610
BINDING SITE FOR RESIDUE CL A1214
11
BC2
SOFTWARE
HIS A:699 , ASN A:702
BINDING SITE FOR RESIDUE CL A1215
12
BC3
SOFTWARE
TYR A:110 , ASP A:112 , GLN A:396
BINDING SITE FOR RESIDUE CL A1216
13
BC4
SOFTWARE
LYS A:760 , SER A:761
BINDING SITE FOR RESIDUE CL A1217
14
BC5
SOFTWARE
SER A:775 , ASP A:776 , ALA A:777
BINDING SITE FOR RESIDUE CL A1218
15
BC6
SOFTWARE
ALA A:718 , LEU A:719
BINDING SITE FOR RESIDUE CL A1220
16
BC7
SOFTWARE
TYR A:768 , ASP A:776 , GLN A:780
BINDING SITE FOR RESIDUE CL A1221
17
BC8
SOFTWARE
ASP A:679 , ASP A:680 , HOH A:2190
BINDING SITE FOR RESIDUE CL A1229
18
BC9
SOFTWARE
THR A:652 , GLY A:653 , THR A:654 , E06 A:1000
BINDING SITE FOR RESIDUE NA A1300
19
CC1
SOFTWARE
SER A:634 , SER B:634
BINDING SITE FOR RESIDUE CL A1791
20
CC2
SOFTWARE
ALA A:491 , ALA B:459 , SER B:460 , LYS B:463 , SER B:516 , ASN B:518 , MET B:556 , GLY B:557 , GLY B:558 , THR B:654 , THR B:655 , NA B:1300 , HOH B:2074
BINDING SITE FOR RESIDUE E06 B1000
21
CC3
SOFTWARE
THR B:563 , GLN B:566 , LYS B:583 , HOH B:2116 , HOH B:2129 , HOH B:2247 , HOH B:2248 , HOH B:2249
BINDING SITE FOR RESIDUE SO4 B1100
22
CC4
SOFTWARE
ARG A:529 , ARG B:529
BINDING SITE FOR RESIDUE CL B1200
23
CC5
SOFTWARE
VAL B:535 , LYS B:536 , HOH B:2103
BINDING SITE FOR RESIDUE CL B1201
24
CC6
SOFTWARE
SER B:625 , ARG B:627 , LYS B:633
BINDING SITE FOR RESIDUE CL B1202
25
CC7
SOFTWARE
ASP B:593 , HOH B:2035
BINDING SITE FOR RESIDUE CL B1206
26
CC8
SOFTWARE
GLU B:727 , LYS B:735
BINDING SITE FOR RESIDUE CL B1208
27
CC9
SOFTWARE
TYR B:544 , GLU B:545 , HOH B:2051 , HOH B:2116 , HOH B:2247
BINDING SITE FOR RESIDUE CL B1211
28
DC1
SOFTWARE
GLU B:346 , VAL B:585 , ILE B:586 , HOH B:2005
BINDING SITE FOR RESIDUE CL B1212
29
DC2
SOFTWARE
ASP B:337 , TYR B:338 , LEU B:339 , HIS B:399
BINDING SITE FOR RESIDUE CL B1213
30
DC3
SOFTWARE
LYS B:610
BINDING SITE FOR RESIDUE CL B1214
31
DC4
SOFTWARE
HIS B:699 , ASN B:702
BINDING SITE FOR RESIDUE CL B1215
32
DC5
SOFTWARE
TYR B:110 , SER B:111 , ASP B:112 , GLN B:396
BINDING SITE FOR RESIDUE CL B1216
33
DC6
SOFTWARE
ASN B:759 , LYS B:760 , SER B:761
BINDING SITE FOR RESIDUE CL B1217
34
DC7
SOFTWARE
SER B:775 , ALA B:777
BINDING SITE FOR RESIDUE CL B1218
35
DC8
SOFTWARE
LYS B:725
BINDING SITE FOR RESIDUE CL B1219
36
DC9
SOFTWARE
ALA B:718 , LEU B:719
BINDING SITE FOR RESIDUE CL B1220
37
EC1
SOFTWARE
TYR B:768 , ASP B:776 , GLN B:780
BINDING SITE FOR RESIDUE CL B1221
38
EC2
SOFTWARE
THR B:652 , GLY B:653 , THR B:654 , E06 B:1000 , HOH B:2082
BINDING SITE FOR RESIDUE NA B1300
39
EC3
SOFTWARE
ASN A:492 , ASN A:494 , ASN B:492 , ASN B:494
BINDING SITE FOR RESIDUE CL B1792
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Atom Selection
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)
Protein
Nucleic
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Sidechain
Hetero
Ligand
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set label size to 20 (allowed range: 1-58)
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