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2Y2L
Biol. Unit 1
Info
Asym.Unit (325 KB)
Biol.Unit 1 (317 KB)
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(1)
Title
:
PENICILLIN-BINDING PROTEIN 1B (PBP-1B) IN COMPLEX WITH AN ALKYL BORONATE (E06)
Authors
:
C. Contreras-Martel, A. Amoroso, E. C. Woon, A. Zervosen, S. Inglis, A. O. Verlaine, A. Rydzik, V. Job, A. Luxen, B. Joris, C. J. Schofield, A. D
Date
:
15 Dec 10 (Deposition) - 03 Aug 11 (Release) - 25 Jan 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.07
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transferase, Infection, Cell Wall, Peptidoglycan, Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Contreras-Martel, A. Amoroso, E. C. Woon, A. Zervosen, S. Inglis, A. Martins, O. Verlaine, A. Rydzik, V. Job, A. Luxen, B. Joris, C. J. Schofield, A. Dessen
Structure-Guided Design Of Cell Wall Biosynthesis Inhibitors That Overcome Beta-Lactam Resistance In Staphylococcus Aureus (Mrsa).
Acs Chem. Biol. V. 6 943 2011
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1aa: CHLORIDE ION (CLaa)
1ab: CHLORIDE ION (CLab)
1ac: CHLORIDE ION (CLac)
1ad: CHLORIDE ION (CLad)
1ae: CHLORIDE ION (CLae)
1af: CHLORIDE ION (CLaf)
1ag: CHLORIDE ION (CLag)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
1q: CHLORIDE ION (CLq)
1r: CHLORIDE ION (CLr)
1s: CHLORIDE ION (CLs)
1t: CHLORIDE ION (CLt)
1u: CHLORIDE ION (CLu)
1v: CHLORIDE ION (CLv)
1w: CHLORIDE ION (CLw)
1x: CHLORIDE ION (CLx)
1y: CHLORIDE ION (CLy)
1z: CHLORIDE ION (CLz)
2a: [(1R)-1-[(2,6-DIFLUOROPHENYL)CARBO... (E06a)
2b: [(1R)-1-[(2,6-DIFLUOROPHENYL)CARBO... (E06b)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
E06
2
Ligand/Ion
[(1R)-1-[(2,6-DIFLUOROPHENYL)CARBONYLAMINO]ETHYL]-TRIHYDROXY-BORON
3
NA
-1
Ligand/Ion
SODIUM ION
4
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:459 , SER A:460 , TYR A:498 , SER A:516 , ASN A:518 , MET A:556 , GLY A:557 , GLY A:558 , THR A:654 , THR A:655 , NA A:1300 , HOH A:2081 , ASN B:492
BINDING SITE FOR RESIDUE E06 A1000
02
AC2
SOFTWARE
THR A:563 , GLN A:566 , LYS A:583 , HOH A:2114 , HOH A:2247 , HOH A:2248 , HOH A:2249
BINDING SITE FOR RESIDUE SO4 A1100
03
AC3
SOFTWARE
ARG A:529 , HOH A:2122 , ARG B:529
BINDING SITE FOR RESIDUE CL A1200
04
AC4
SOFTWARE
VAL A:535 , LYS A:536 , HOH A:2102
BINDING SITE FOR RESIDUE CL A1201
05
AC5
SOFTWARE
ARG A:627 , LYS A:633
BINDING SITE FOR RESIDUE CL A1202
06
AC6
SOFTWARE
GLU A:727 , LYS A:735
BINDING SITE FOR RESIDUE CL A1208
07
AC7
SOFTWARE
GLU A:545 , VAL A:562 , HOH A:2114
BINDING SITE FOR RESIDUE CL A1211
08
AC8
SOFTWARE
VAL A:585 , ILE A:586 , HOH A:2007
BINDING SITE FOR RESIDUE CL A1212
09
AC9
SOFTWARE
ASP A:337 , TYR A:338 , LEU A:339 , HIS A:399 , GLN A:403
BINDING SITE FOR RESIDUE CL A1213
10
BC1
SOFTWARE
LYS A:610
BINDING SITE FOR RESIDUE CL A1214
11
BC2
SOFTWARE
HIS A:699 , ASN A:702
BINDING SITE FOR RESIDUE CL A1215
12
BC3
SOFTWARE
TYR A:110 , ASP A:112 , GLN A:396
BINDING SITE FOR RESIDUE CL A1216
13
BC4
SOFTWARE
LYS A:760 , SER A:761
BINDING SITE FOR RESIDUE CL A1217
14
BC5
SOFTWARE
SER A:775 , ASP A:776 , ALA A:777
BINDING SITE FOR RESIDUE CL A1218
15
BC6
SOFTWARE
ALA A:718 , LEU A:719
BINDING SITE FOR RESIDUE CL A1220
16
BC7
SOFTWARE
TYR A:768 , ASP A:776 , GLN A:780
BINDING SITE FOR RESIDUE CL A1221
17
BC8
SOFTWARE
ASP A:679 , ASP A:680 , HOH A:2190
BINDING SITE FOR RESIDUE CL A1229
18
BC9
SOFTWARE
THR A:652 , GLY A:653 , THR A:654 , E06 A:1000
BINDING SITE FOR RESIDUE NA A1300
19
CC1
SOFTWARE
SER A:634 , SER B:634
BINDING SITE FOR RESIDUE CL A1791
20
CC2
SOFTWARE
ALA A:491 , ALA B:459 , SER B:460 , LYS B:463 , SER B:516 , ASN B:518 , MET B:556 , GLY B:557 , GLY B:558 , THR B:654 , THR B:655 , NA B:1300 , HOH B:2074
BINDING SITE FOR RESIDUE E06 B1000
21
CC3
SOFTWARE
THR B:563 , GLN B:566 , LYS B:583 , HOH B:2116 , HOH B:2129 , HOH B:2247 , HOH B:2248 , HOH B:2249
BINDING SITE FOR RESIDUE SO4 B1100
22
CC4
SOFTWARE
ARG A:529 , ARG B:529
BINDING SITE FOR RESIDUE CL B1200
23
CC5
SOFTWARE
VAL B:535 , LYS B:536 , HOH B:2103
BINDING SITE FOR RESIDUE CL B1201
24
CC6
SOFTWARE
SER B:625 , ARG B:627 , LYS B:633
BINDING SITE FOR RESIDUE CL B1202
25
CC7
SOFTWARE
ASP B:593 , HOH B:2035
BINDING SITE FOR RESIDUE CL B1206
26
CC8
SOFTWARE
GLU B:727 , LYS B:735
BINDING SITE FOR RESIDUE CL B1208
27
CC9
SOFTWARE
TYR B:544 , GLU B:545 , HOH B:2051 , HOH B:2116 , HOH B:2247
BINDING SITE FOR RESIDUE CL B1211
28
DC1
SOFTWARE
GLU B:346 , VAL B:585 , ILE B:586 , HOH B:2005
BINDING SITE FOR RESIDUE CL B1212
29
DC2
SOFTWARE
ASP B:337 , TYR B:338 , LEU B:339 , HIS B:399
BINDING SITE FOR RESIDUE CL B1213
30
DC3
SOFTWARE
LYS B:610
BINDING SITE FOR RESIDUE CL B1214
31
DC4
SOFTWARE
HIS B:699 , ASN B:702
BINDING SITE FOR RESIDUE CL B1215
32
DC5
SOFTWARE
TYR B:110 , SER B:111 , ASP B:112 , GLN B:396
BINDING SITE FOR RESIDUE CL B1216
33
DC6
SOFTWARE
ASN B:759 , LYS B:760 , SER B:761
BINDING SITE FOR RESIDUE CL B1217
34
DC7
SOFTWARE
SER B:775 , ALA B:777
BINDING SITE FOR RESIDUE CL B1218
35
DC8
SOFTWARE
LYS B:725
BINDING SITE FOR RESIDUE CL B1219
36
DC9
SOFTWARE
ALA B:718 , LEU B:719
BINDING SITE FOR RESIDUE CL B1220
37
EC1
SOFTWARE
TYR B:768 , ASP B:776 , GLN B:780
BINDING SITE FOR RESIDUE CL B1221
38
EC2
SOFTWARE
THR B:652 , GLY B:653 , THR B:654 , E06 B:1000 , HOH B:2082
BINDING SITE FOR RESIDUE NA B1300
39
EC3
SOFTWARE
ASN A:492 , ASN A:494 , ASN B:492 , ASN B:494
BINDING SITE FOR RESIDUE CL B1792
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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