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2Y2J
Biol. Unit 1
Info
Asym.Unit (167 KB)
Biol.Unit 1 (318 KB)
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(1)
Title
:
PENICILLIN-BINDING PROTEIN 1B (PBP-1B) IN COMPLEX WITH AN ALKYL BORONATE (ZA4)
Authors
:
C. Contreras-Martel, A. Amoroso, E. C. Woon, A. Zervosen, S. Inglis, A. O. Verlaine, A. Rydzik, V. Job, A. Luxen, B. Joris, C. J. Schofield, A. D
Date
:
15 Dec 10 (Deposition) - 03 Aug 11 (Release) - 26 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.06
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Transferase, Infection, Cell Wall, Peptidoglycan, Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Contreras-Martel, A. Amoroso, E. C. Woon, A. Zervosen, S. Inglis, A. Martins, O. Verlaine, A. Rydzik, V. Job, A. Luxen, B. Joris, C. J. Schofield, A. Dessen
Structure-Guided Design Of Cell Wall Biosynthesis Inhibitors That Overcome Beta-Lactam Resistance In Staphylococcus Aureus (Mrsa).
Acs Chem. Biol V. 6 943 2011
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
2a: 1,2-ETHANEDIOL (EDOa)
3a: SODIUM ION (NAa)
4a: SULFATE ION (SO4a)
5a: [(2-FLUOROPHENYL)CARBONYLAMINO]MET... (ZA4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
NA
-1
Ligand/Ion
SODIUM ION
4
SO4
2
Ligand/Ion
SULFATE ION
5
ZA4
2
Ligand/Ion
[(2-FLUOROPHENYL)CARBONYLAMINO]METHYL-TRIHYDROXY-BORON
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:459 , SER A:460 , TYR A:498 , SER A:516 , ASN A:518 , MET A:556 , GLY A:558 , GLY A:653 , THR A:654 , THR A:655 , NA A:1300
BINDING SITE FOR RESIDUE ZA4 A1000
02
AC2
SOFTWARE
THR A:563 , LYS A:583 , HOH A:2157 , HOH A:2273 , HOH A:2274
BINDING SITE FOR RESIDUE SO4 A1100
03
AC3
SOFTWARE
ARG A:529 , HOH A:2147
BINDING SITE FOR RESIDUE CL A1200
04
AC4
SOFTWARE
VAL A:535 , LYS A:536
BINDING SITE FOR RESIDUE CL A1201
05
AC5
SOFTWARE
SER A:625 , ARG A:627 , LYS A:633
BINDING SITE FOR RESIDUE CL A1202
06
AC6
SOFTWARE
ASP A:593 , ARG A:595
BINDING SITE FOR RESIDUE CL A1206
07
AC7
SOFTWARE
SER A:726 , GLU A:727 , LYS A:735
BINDING SITE FOR RESIDUE CL A1208
08
AC8
SOFTWARE
TYR A:544 , GLU A:545 , HOH A:2273
BINDING SITE FOR RESIDUE CL A1211
09
AC9
SOFTWARE
GLU A:346 , HIS A:584 , VAL A:585 , ILE A:586 , HOH A:2171
BINDING SITE FOR RESIDUE CL A1212
10
BC1
SOFTWARE
ASP A:337 , TYR A:338 , LEU A:339 , HIS A:399 , GLN A:403
BINDING SITE FOR RESIDUE CL A1213
11
BC2
SOFTWARE
SER A:609 , LYS A:610
BINDING SITE FOR RESIDUE CL A1214
12
BC3
SOFTWARE
TYR A:110 , ASP A:112 , GLN A:396
BINDING SITE FOR RESIDUE CL A1216
13
BC4
SOFTWARE
LEU A:729 , LYS A:730 , SER A:731 , SER A:751
BINDING SITE FOR RESIDUE CL A1217
14
BC5
SOFTWARE
THR A:342 , ASN A:449 , HOH A:2007 , HOH A:2076
BINDING SITE FOR RESIDUE CL A1224
15
BC6
SOFTWARE
ARG A:358 , ASN A:645 , HOH A:2016
BINDING SITE FOR RESIDUE CL A1227
16
BC7
SOFTWARE
THR A:652 , GLY A:653 , THR A:654 , ZA4 A:1000
BINDING SITE FOR RESIDUE NA A1300
17
BC8
SOFTWARE
LEU A:619 , GLU A:622 , TYR A:756 , HOH A:2095 , HOH A:2097 , HOH A:2275
BINDING SITE FOR RESIDUE EDO A1400
18
BC9
SOFTWARE
SER A:634
BINDING SITE FOR RESIDUE CL A1791
19
CC1
SOFTWARE
ASN A:492 , ASN A:494
BINDING SITE FOR RESIDUE CL A1792
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (167 KB)
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Header - Biol.Unit 1
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