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2Y1M
Asym. Unit
Info
Asym.Unit (388 KB)
Biol.Unit 1 (69 KB)
Biol.Unit 2 (69 KB)
Biol.Unit 3 (69 KB)
Biol.Unit 4 (69 KB)
Biol.Unit 5 (69 KB)
Biol.Unit 6 (69 KB)
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(1)
Title
:
STRUCTURE OF NATIVE C-CBL
Authors
:
H. Dou, G. J. Sibbet, D. T. Huang
Date
:
08 Dec 10 (Deposition) - 18 Jan 12 (Release) - 15 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.67
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Ligase, Ubiquitin Ring E3 Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Dou, L. Buetow, A. Hock, G. J. Sibbet, K. H. Vousden, D. T. Huang
Structural Basis For Autoinhibition And Phosphorylation- Dependent Activation Of C-Cbl.
Nat. Struct. Mol. Biol. V. 19 184 2012
[
close entry info
]
Hetero Components
(2, 18)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
2i: ZINC ION (ZNi)
2j: ZINC ION (ZNj)
2k: ZINC ION (ZNk)
2l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
6
Ligand/Ion
CALCIUM ION
2
ZN
12
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:381 , CYS A:384 , CYS A:401 , CYS A:404
BINDING SITE FOR RESIDUE ZN A1436
02
AC2
SOFTWARE
CYS A:396 , HIS A:398 , CYS A:416 , CYS A:419
BINDING SITE FOR RESIDUE ZN A1437
03
AC3
SOFTWARE
CYS B:381 , CYS B:384 , CYS B:401 , CYS B:404
BINDING SITE FOR RESIDUE ZN B1436
04
AC4
SOFTWARE
CYS B:396 , HIS B:398 , CYS B:416 , CYS B:419
BINDING SITE FOR RESIDUE ZN B1437
05
AC5
SOFTWARE
CYS C:381 , CYS C:384 , CYS C:401 , CYS C:404
BINDING SITE FOR RESIDUE ZN C1436
06
AC6
SOFTWARE
CYS C:396 , HIS C:398 , CYS C:416 , CYS C:419
BINDING SITE FOR RESIDUE ZN C1437
07
AC7
SOFTWARE
CYS D:381 , CYS D:384 , CYS D:401 , CYS D:404
BINDING SITE FOR RESIDUE ZN D1436
08
AC8
SOFTWARE
CYS D:396 , HIS D:398 , CYS D:416 , CYS D:419
BINDING SITE FOR RESIDUE ZN D1437
09
AC9
SOFTWARE
CYS E:381 , ILE E:383 , CYS E:384 , CYS E:401 , CYS E:404
BINDING SITE FOR RESIDUE ZN E1436
10
BC1
SOFTWARE
CYS E:396 , HIS E:398 , CYS E:416 , CYS E:419
BINDING SITE FOR RESIDUE ZN E1437
11
BC2
SOFTWARE
CYS F:381 , CYS F:384 , CYS F:401 , CYS F:404
BINDING SITE FOR RESIDUE ZN F1436
12
BC3
SOFTWARE
CYS F:396 , HIS F:398 , CYS F:416 , CYS F:419
BINDING SITE FOR RESIDUE ZN F1437
13
BC4
SOFTWARE
ASP B:229 , THR B:231 , ASN B:233 , TYR B:235 , GLU B:240 , HOH B:2008
BINDING SITE FOR RESIDUE CA B1438
14
BC5
SOFTWARE
ASP D:229 , THR D:231 , ASN D:233 , TYR D:235 , GLU D:240
BINDING SITE FOR RESIDUE CA D1438
15
BC6
SOFTWARE
ASP A:229 , THR A:231 , ASN A:233 , TYR A:235 , GLU A:240
BINDING SITE FOR RESIDUE CA A1438
16
BC7
SOFTWARE
ASP C:229 , THR C:231 , ASN C:233 , TYR C:235 , GLU C:240
BINDING SITE FOR RESIDUE CA C1438
17
BC8
SOFTWARE
ASP E:229 , THR E:231 , ASN E:233 , TYR E:235 , GLU E:240
BINDING SITE FOR RESIDUE CA E1438
18
BC9
SOFTWARE
ASP F:229 , THR F:231 , ASN F:233 , TYR F:235 , GLU F:240
BINDING SITE FOR RESIDUE CA F1438
[
close Site info
]
SAPs(SNPs)/Variants
(6, 36)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071040 (K287R, chain A/B/C/D/E/F, )
2: VAR_064332 (Q367P, chain A/B/C/D/E/F, )
3: VAR_071042 (Y371H, chain A/B/C/D/E/F, )
4: VAR_064333 (K382E, chain A/B/C/D/E/F, )
5: VAR_064334 (D390Y, chain A/B/C/D/E/F, )
6: VAR_064335 (R420Q, chain A/B/C/D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071040
K
287
R
CBL_HUMAN
Unclassified
---
A/B/C/D/E/F
K
287
R
2
UniProt
VAR_064332
Q
367
P
CBL_HUMAN
Disease (NSLL)
---
A/B/C/D/E/F
Q
367
P
3
UniProt
VAR_071042
Y
371
H
CBL_HUMAN
Unclassified
267606706
A/B/C/D/E/F
Y
371
H
4
UniProt
VAR_064333
K
382
E
CBL_HUMAN
Disease (NSLL)
---
A/B/C/D/E/F
K
382
E
5
UniProt
VAR_064334
D
390
Y
CBL_HUMAN
Disease (NSLL)
---
A/B/C/D/E/F
D
390
Y
6
UniProt
VAR_064335
R
420
Q
CBL_HUMAN
Disease (NSLL)
---
A/B/C/D/E/F
R
420
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 18)
Info
All PROSITE Patterns/Profiles
1: CBL_PTB (A:47-351,B:47-351,C:47-351,D:47-35...)
2: ZF_RING_2 (A:381-420,B:381-420,C:381-420,D:38...)
3: ZF_RING_1 (A:396-405,B:396-405,C:396-405,D:39...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CBL_PTB
PS51506
Cbl-type phosphotyrosine-binding (Cbl-PTB) domain profile.
CBL_HUMAN
47-351
6
A:47-351
B:47-351
C:47-351
D:47-351
E:47-351
F:47-351
2
ZF_RING_2
PS50089
Zinc finger RING-type profile.
CBL_HUMAN
381-420
6
A:381-420
B:381-420
C:381-420
D:381-420
E:381-420
F:381-420
3
ZF_RING_1
PS00518
Zinc finger RING-type signature.
CBL_HUMAN
396-405
6
A:396-405
B:396-405
C:396-405
D:396-405
E:396-405
F:396-405
[
close PROSITE info
]
Exons
(9, 54)
Info
All Exons
Exon 1.1 (A:47-65 | B:47-65 | C:47-65 | D:47...)
Exon 1.2 (A:66-148 | B:66-148 | C:66-148 | D...)
Exon 1.3 (A:148-197 | B:148-197 | C:148-197 ...)
Exon 1.4 (A:197-249 | B:197-249 | C:197-249 ...)
Exon 1.5 (A:250-290 | B:250-290 | C:250-290 ...)
Exon 1.6 (A:290-336 | B:290-336 | C:290-336 ...)
Exon 1.7 (A:336-365 (gaps) | B:336-365 (gaps...)
Exon 1.8 (A:366-409 | B:366-409 | C:366-409 ...)
Exon 1.9 (A:410-435 | B:410-435 | C:410-435 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000264033
1
ENSE00001240819
chr11:
119076752-119077322
571
CBL_HUMAN
1-65
65
6
A:47-65
B:47-65
C:47-65
D:47-65
E:47-65
F:47-65
19
19
19
19
19
19
1.2
ENST00000264033
2
ENSE00001240799
chr11:
119103158-119103405
248
CBL_HUMAN
66-148
83
6
A:66-148
B:66-148
C:66-148
D:66-148
E:66-148
F:66-148
83
83
83
83
83
83
1.3
ENST00000264033
3
ENSE00001240795
chr11:
119142445-119142591
147
CBL_HUMAN
148-197
50
6
A:148-197
B:148-197
C:148-197
D:148-197
E:148-197
F:148-197
50
50
50
50
50
50
1.4
ENST00000264033
4
ENSE00001240790
chr11:
119144578-119144734
157
CBL_HUMAN
197-249
53
6
A:197-249
B:197-249
C:197-249
D:197-249
E:197-249
F:197-249
53
53
53
53
53
53
1.5
ENST00000264033
5
ENSE00001240782
chr11:
119145542-119145663
122
CBL_HUMAN
250-290
41
6
A:250-290
B:250-290
C:250-290
D:250-290
E:250-290
F:250-290
41
41
41
41
41
41
1.6
ENST00000264033
6
ENSE00001240776
chr11:
119146707-119146844
138
CBL_HUMAN
290-336
47
6
A:290-336
B:290-336
C:290-336
D:290-336
E:290-336
F:290-336
47
47
47
47
47
47
1.7
ENST00000264033
7
ENSE00001128289
chr11:
119148467-119148554
88
CBL_HUMAN
336-365
30
6
A:336-365 (gaps)
B:336-365 (gaps)
C:336-365 (gaps)
D:336-365 (gaps)
E:336-365 (gaps)
F:336-365 (gaps)
30
30
30
30
30
30
1.8
ENST00000264033
8
ENSE00001795866
chr11:
119148876-119149007
132
CBL_HUMAN
366-409
44
6
A:366-409
B:366-409
C:366-409
D:366-409
E:366-409
F:366-409
44
44
44
44
44
44
1.9
ENST00000264033
9
ENSE00001128273
chr11:
119149220-119149423
204
CBL_HUMAN
410-477
68
6
A:410-435
B:410-435
C:410-435
D:410-435
E:410-435
F:410-435
26
26
26
26
26
26
1.10
ENST00000264033
10
ENSE00000796209
chr11:
119155679-119155810
132
CBL_HUMAN
478-521
44
0
-
-
1.11
ENST00000264033
11
ENSE00001206751
chr11:
119155899-119156276
378
CBL_HUMAN
522-647
126
0
-
-
1.12
ENST00000264033
12
ENSE00000796211
chr11:
119158562-119158656
95
CBL_HUMAN
648-679
32
0
-
-
1.13
ENST00000264033
13
ENSE00000796212
chr11:
119167628-119167744
117
CBL_HUMAN
679-718
40
0
-
-
1.14
ENST00000264033
14
ENSE00000796213
chr11:
119168094-119168191
98
CBL_HUMAN
718-751
34
0
-
-
1.15
ENST00000264033
15
ENSE00000796214
chr11:
119169068-119169250
183
CBL_HUMAN
751-812
62
0
-
-
1.16
ENST00000264033
16
ENSE00001238481
chr11:
119170205-119177651
7447
CBL_HUMAN
812-906
95
0
-
-
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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