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2Y0S
Asym. Unit
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Asym.Unit (2.2 MB)
Biol.Unit 1, α-C (1.1 MB)
Biol.Unit 1 (1.1 MB)
Biol.Unit 2, α-C (1.1 MB)
Biol.Unit 2 (1.1 MB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SULFOLOBUS SHIBATAE RNA POLYMERASE IN P21 SPACE GROUP
Authors
:
M. Wojtas, B. Peralta, M. Ondiviela, M. Mogni, S. D. Bell, N. G. A. Abresc
Date
:
07 Dec 10 (Deposition) - 16 Feb 11 (Release) - 03 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z
Biol. Unit 1: K,M,O,Q,R,S,T,U,V,W,X,Y,Z (1x)
Biol. Unit 2: A,B,C,D,E,F,G,H,I,J,L,N,P (1x)
Keywords
:
Transferase, Nucleotidyltransferase, Transcription, Metal-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Wojtas, B. Peralta, M. Ondiviela, M. Mogni, S. D. Bell, N. G. A. Abrescia
Archaeal Rna Polymerase: The Influence Of The Protruding Stalk In Crystal Packing And Preliminary Biophysical Analysis Of The Rpo13 Subunit.
Biochem. Soc. Trans. V. 39 25 2011
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: FE3-S4 CLUSTER (F3Sa)
1b: FE3-S4 CLUSTER (F3Sb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
3i: ZINC ION (ZNi)
3j: ZINC ION (ZNj)
3k: ZINC ION (ZNk)
3l: ZINC ION (ZNl)
3m: ZINC ION (ZNm)
3n: ZINC ION (ZNn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
F3S
2
Ligand/Ion
FE3-S4 CLUSTER
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
ZN
14
Ligand/Ion
ZINC ION
[
close Hetero Component info
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:58 , THR A:60 , CYS A:61 , CYS A:68 , HIS A:71
BINDING SITE FOR RESIDUE ZN A1880
02
AC2
SOFTWARE
CYS A:98 , CYS A:101 , VAL A:145 , CYS A:146
BINDING SITE FOR RESIDUE ZN A1881
03
AC3
SOFTWARE
ASP A:456 , ASP A:458 , ASP A:460
BINDING SITE FOR RESIDUE MG A1882
04
AC4
SOFTWARE
CYS B:1064 , CYS B:1067 , CYS B:1082 , ILE B:1084
BINDING SITE FOR RESIDUE ZN B2123
05
AC5
SOFTWARE
HIS B:570 , ASN B:572 , GLU B:622
BINDING SITE FOR RESIDUE ZN B2124
06
AC6
SOFTWARE
ASP B:418 , THR B:420
BINDING SITE FOR RESIDUE ZN B2125
07
AC7
SOFTWARE
CYS D:183 , GLU D:185 , VAL D:187 , CYS D:203 , THR D:204 , LEU D:205 , CYS D:206 , GLU D:207 , CYS D:209 , ILE D:219
BINDING SITE FOR RESIDUE F3S D1001
08
AC8
SOFTWARE
CYS N:7 , CYS N:10 , CYS N:44 , CYS N:45
BINDING SITE FOR RESIDUE ZN N1065
09
AC9
SOFTWARE
CYS O:7 , CYS O:10 , CYS O:44 , CYS O:45
BINDING SITE FOR RESIDUE ZN O1065
10
BC1
SOFTWARE
CYS P:9 , THR P:12 , CYS P:26 , CYS P:29
BINDING SITE FOR RESIDUE ZN P1049
11
BC2
SOFTWARE
CYS R:1064 , CYS R:1067 , CYS R:1082 , ILE R:1084
BINDING SITE FOR RESIDUE ZN R2123
12
BC3
SOFTWARE
HIS R:570 , ASN R:572 , GLU R:622
BINDING SITE FOR RESIDUE ZN R2124
13
BC4
SOFTWARE
ASP R:418 , THR R:420
BINDING SITE FOR RESIDUE ZN R2125
14
BC5
SOFTWARE
CYS S:183 , GLU S:185 , VAL S:187 , CYS S:203 , THR S:204 , LEU S:205 , CYS S:206 , GLU S:207 , CYS S:209 , ILE S:219
BINDING SITE FOR RESIDUE F3S S1001
15
BC6
SOFTWARE
CYS W:58 , THR W:60 , CYS W:61 , CYS W:68 , HIS W:71
BINDING SITE FOR RESIDUE ZN W1880
16
BC7
SOFTWARE
CYS W:98 , CYS W:101 , VAL W:145 , CYS W:146
BINDING SITE FOR RESIDUE ZN W1881
17
BC8
SOFTWARE
ASP W:456 , ASP W:458 , ASP W:460
BINDING SITE FOR RESIDUE MG W1882
18
BC9
SOFTWARE
CYS X:9 , THR X:12 , CYS X:26 , CYS X:29
BINDING SITE FOR RESIDUE ZN X1049
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(23, 48)
Info
all PFAM domains
01a: PFAM_RNA_pol_Rpb4_2y0sU01 (U:11-92)
01b: PFAM_RNA_pol_Rpb4_2y0sU02 (U:11-92)
02a: PFAM_RNA_pol_Rpb2_6_2y0sR01 (R:652-1025)
02b: PFAM_RNA_pol_Rpb2_6_2y0sR02 (R:652-1025)
03a: PFAM_S1_2y0sT01 (T:79-151)
03b: PFAM_S1_2y0sT02 (T:79-151)
04a: PFAM_RNA_pol_L_2y0sS01 (S:13-254)
04b: PFAM_RNA_pol_L_2y0sS02 (S:13-254)
05a: PFAM_RNA_pol_L_2_2y0sM01 (M:11-87)
05b: PFAM_RNA_pol_L_2_2y0sM02 (M:11-87)
06a: PFAM_SHS2_Rpb7_N_2y0sT03 (T:8-77)
06b: PFAM_SHS2_Rpb7_N_2y0sT04 (T:8-77)
07a: PFAM_DNA_RNApol_7kD_2y0sX01 (X:4-38)
07b: PFAM_DNA_RNApol_7kD_2y0sX02 (X:4-38)
08a: PFAM_RNA_pol_A_bac_2y0sS03 (S:44-157)
08b: PFAM_RNA_pol_A_bac_2y0sS04 (S:44-157)
09a: PFAM_RNA_pol_N_2y0sO01 (O:1-60)
09b: PFAM_RNA_pol_N_2y0sO02 (O:1-60)
10a: PFAM_RNA_pol_Rpb1_1_2y0sW01 (W:4-313)
10b: PFAM_RNA_pol_Rpb1_1_2y0sW02 (W:4-313)
11a: PFAM_RNA_pol_Rpb1_2_2y0sW03 (W:315-482)
11b: PFAM_RNA_pol_Rpb1_2_2y0sW04 (W:315-482)
12a: PFAM_RNA_pol_Rpb1_3_2y0sW05 (W:485-651)
12b: PFAM_RNA_pol_Rpb1_3_2y0sW06 (W:485-651)
13a: PFAM_RNA_pol_Rpb1_4_2y0sW07 (W:676-782)
13b: PFAM_RNA_pol_Rpb1_4_2y0sW08 (W:676-782)
14a: PFAM_RNA_pol_Rpb1_5_2y0sW09 (W:789-869)
14b: PFAM_RNA_pol_Rpb1_5_2y0sW10 (W:789-869)
14c: PFAM_RNA_pol_Rpb1_5_2y0sY01 (Y:21-344)
14d: PFAM_RNA_pol_Rpb1_5_2y0sY02 (Y:21-344)
15a: PFAM_RNA_pol_Rpb2_1_2y0sR03 (R:25-404)
15b: PFAM_RNA_pol_Rpb2_1_2y0sR04 (R:25-404)
16a: PFAM_RNA_pol_Rpb2_2_2y0sR05 (R:171-347)
16b: PFAM_RNA_pol_Rpb2_2_2y0sR06 (R:171-347)
17a: PFAM_RNA_pol_Rpb2_3_2y0sR07 (R:415-480)
17b: PFAM_RNA_pol_Rpb2_3_2y0sR08 (R:415-480)
18a: PFAM_RNA_pol_Rpb2_4_2y0sR09 (R:523-587)
18b: PFAM_RNA_pol_Rpb2_4_2y0sR10 (R:523-587)
19a: PFAM_RNA_pol_Rpb2_5_2y0sR11 (R:607-647)
19b: PFAM_RNA_pol_Rpb2_5_2y0sR12 (R:607-647)
20a: PFAM_RNA_pol_Rpb2_7_2y0sR13 (R:1027-1119)
20b: PFAM_RNA_pol_Rpb2_7_2y0sR14 (R:1027-1119)
21a: PFAM_RNA_pol_Rpb5_C_2y0sZ01 (Z:9-82)
21b: PFAM_RNA_pol_Rpb5_C_2y0sZ02 (Z:9-82)
22a: PFAM_RNA_pol_Rpb6_2y0sK01 (K:20-78)
22b: PFAM_RNA_pol_Rpb6_2y0sK02 (K:20-78)
23a: PFAM_RNA_pol_Rpo13_2y0sQ01 (Q:39-59)
23b: PFAM_RNA_pol_Rpo13_2y0sQ02 (Q:39-59)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
HRDC-like
(19)
Family
:
RNA_pol_Rpb4
(11)
Sulfolobus shibatae B12
(1)
01a
RNA_pol_Rpb4-2y0sU01
U:11-92
01b
RNA_pol_Rpb4-2y0sU02
U:11-92
Clan
:
LEF-8-like
(36)
Family
:
RNA_pol_Rpb2_6
(36)
Sulfolobus shibatae B12
(1)
02a
RNA_pol_Rpb2_6-2y0sR01
R:652-1025
02b
RNA_pol_Rpb2_6-2y0sR02
R:652-1025
Clan
:
OB
(224)
Family
:
S1
(23)
Sulfolobus shibatae B12
(1)
03a
S1-2y0sT01
T:79-151
03b
S1-2y0sT02
T:79-151
Clan
:
RBP11-like
(36)
Family
:
RNA_pol_L
(36)
Sulfolobus shibatae B12
(1)
04a
RNA_pol_L-2y0sS01
S:13-254
04b
RNA_pol_L-2y0sS02
S:13-254
Family
:
RNA_pol_L_2
(27)
Sulfolobus shibatae B12
(1)
05a
RNA_pol_L_2-2y0sM01
M:11-87
05b
RNA_pol_L_2-2y0sM02
M:11-87
Clan
:
SHS2
(26)
Family
:
SHS2_Rpb7-N
(12)
Sulfolobus shibatae B12
(1)
06a
SHS2_Rpb7-N-2y0sT03
T:8-77
06b
SHS2_Rpb7-N-2y0sT04
T:8-77
Clan
:
Zn_Beta_Ribbon
(109)
Family
:
DNA_RNApol_7kD
(28)
Sulfolobus shibatae B12
(1)
07a
DNA_RNApol_7kD-2y0sX01
X:4-38
07b
DNA_RNApol_7kD-2y0sX02
X:4-38
Clan
:
no clan defined [family: RNA_pol_A_bac]
(36)
Family
:
RNA_pol_A_bac
(36)
Sulfolobus shibatae B12
(1)
08a
RNA_pol_A_bac-2y0sS03
S:44-157
08b
RNA_pol_A_bac-2y0sS04
S:44-157
Clan
:
no clan defined [family: RNA_pol_N]
(28)
Family
:
RNA_pol_N
(28)
Sulfolobus shibatae B12
(1)
09a
RNA_pol_N-2y0sO01
O:1-60
09b
RNA_pol_N-2y0sO02
O:1-60
Clan
:
no clan defined [family: RNA_pol_Rpb1_1]
(37)
Family
:
RNA_pol_Rpb1_1
(37)
Sulfolobus shibatae B12
(1)
10a
RNA_pol_Rpb1_1-2y0sW01
W:4-313
10b
RNA_pol_Rpb1_1-2y0sW02
W:4-313
Clan
:
no clan defined [family: RNA_pol_Rpb1_2]
(36)
Family
:
RNA_pol_Rpb1_2
(36)
Sulfolobus shibatae B12
(1)
11a
RNA_pol_Rpb1_2-2y0sW03
W:315-482
11b
RNA_pol_Rpb1_2-2y0sW04
W:315-482
Clan
:
no clan defined [family: RNA_pol_Rpb1_3]
(36)
Family
:
RNA_pol_Rpb1_3
(36)
Sulfolobus shibatae B12
(1)
12a
RNA_pol_Rpb1_3-2y0sW05
W:485-651
12b
RNA_pol_Rpb1_3-2y0sW06
W:485-651
Clan
:
no clan defined [family: RNA_pol_Rpb1_4]
(36)
Family
:
RNA_pol_Rpb1_4
(36)
Sulfolobus shibatae B12
(1)
13a
RNA_pol_Rpb1_4-2y0sW07
W:676-782
13b
RNA_pol_Rpb1_4-2y0sW08
W:676-782
Clan
:
no clan defined [family: RNA_pol_Rpb1_5]
(36)
Family
:
RNA_pol_Rpb1_5
(36)
Sulfolobus shibatae B12
(1)
14a
RNA_pol_Rpb1_5-2y0sW09
W:789-869
14b
RNA_pol_Rpb1_5-2y0sW10
W:789-869
14c
RNA_pol_Rpb1_5-2y0sY01
Y:21-344
14d
RNA_pol_Rpb1_5-2y0sY02
Y:21-344
Clan
:
no clan defined [family: RNA_pol_Rpb2_1]
(37)
Family
:
RNA_pol_Rpb2_1
(37)
Sulfolobus shibatae B12
(1)
15a
RNA_pol_Rpb2_1-2y0sR03
R:25-404
15b
RNA_pol_Rpb2_1-2y0sR04
R:25-404
Clan
:
no clan defined [family: RNA_pol_Rpb2_2]
(36)
Family
:
RNA_pol_Rpb2_2
(36)
Sulfolobus shibatae B12
(1)
16a
RNA_pol_Rpb2_2-2y0sR05
R:171-347
16b
RNA_pol_Rpb2_2-2y0sR06
R:171-347
Clan
:
no clan defined [family: RNA_pol_Rpb2_3]
(35)
Family
:
RNA_pol_Rpb2_3
(35)
Sulfolobus shibatae B12
(1)
17a
RNA_pol_Rpb2_3-2y0sR07
R:415-480
17b
RNA_pol_Rpb2_3-2y0sR08
R:415-480
Clan
:
no clan defined [family: RNA_pol_Rpb2_4]
(28)
Family
:
RNA_pol_Rpb2_4
(28)
Sulfolobus shibatae B12
(1)
18a
RNA_pol_Rpb2_4-2y0sR09
R:523-587
18b
RNA_pol_Rpb2_4-2y0sR10
R:523-587
Clan
:
no clan defined [family: RNA_pol_Rpb2_5]
(28)
Family
:
RNA_pol_Rpb2_5
(28)
Sulfolobus shibatae B12
(1)
19a
RNA_pol_Rpb2_5-2y0sR11
R:607-647
19b
RNA_pol_Rpb2_5-2y0sR12
R:607-647
Clan
:
no clan defined [family: RNA_pol_Rpb2_7]
(36)
Family
:
RNA_pol_Rpb2_7
(36)
Sulfolobus shibatae B12
(1)
20a
RNA_pol_Rpb2_7-2y0sR13
R:1027-1119
20b
RNA_pol_Rpb2_7-2y0sR14
R:1027-1119
Clan
:
no clan defined [family: RNA_pol_Rpb5_C]
(28)
Family
:
RNA_pol_Rpb5_C
(28)
Sulfolobus shibatae B12
(1)
21a
RNA_pol_Rpb5_C-2y0sZ01
Z:9-82
21b
RNA_pol_Rpb5_C-2y0sZ02
Z:9-82
Clan
:
no clan defined [family: RNA_pol_Rpb6]
(37)
Family
:
RNA_pol_Rpb6
(37)
Sulfolobus shibatae B12
(1)
22a
RNA_pol_Rpb6-2y0sK01
K:20-78
22b
RNA_pol_Rpb6-2y0sK02
K:20-78
Clan
:
no clan defined [family: RNA_pol_Rpo13]
(1)
Family
:
RNA_pol_Rpo13
(1)
Sulfolobus shibatae B12
(1)
23a
RNA_pol_Rpo13-2y0sQ01
Q:39-59
23b
RNA_pol_Rpo13-2y0sQ02
Q:39-59
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