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2Y0I
Asym. Unit
Info
Asym.Unit (68 KB)
Biol.Unit 1 (123 KB)
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(1)
Title
:
FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH TANKYRASE-2 (TNKS2) FRAGMENT PEPTIDE (21-MER)
Authors
:
R. Chowdhury, M. A. Mcdonough, C. J. Schofield
Date
:
02 Dec 10 (Deposition) - 02 Feb 11 (Release) - 06 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.28
Chains
:
Asym. Unit : A,S
Biol. Unit 1: A,S (2x)
Keywords
:
Oxidoreductase-Peptide Complex, Dioxygenase, Helix-Loop-Helix-Beta, Facial Triad, Asparaginyl/Aspartyl Hydroxylase, Ankyrin Repeat Domain
(Keyword Search:
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Reference
:
M. Yang, R. Chowdhury, W. Ge, R. B. Hamed, M. A. Mcdonough, T. D. W. Claridge, B. M. Kessler, M. E. Cockman, P. J. Ratcliffe, C. J. Schofield
Factor-Inhibiting Hypoxia-Inducible Factor (Fih) Catalyses The Posttranslational Hydroxylation Of Histidinyl Residues Within Ankyrin Repeat Domains.
Febs J. V. 278 1086 2011
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: 2-OXOGLUTARIC ACID (AKGa)
2a: FE (II) ION (FE2a)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AKG
1
Ligand/Ion
2-OXOGLUTARIC ACID
2
FE2
1
Ligand/Ion
FE (II) ION
3
GOL
2
Ligand/Ion
GLYCEROL
4
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:199 , ASP A:201 , HIS A:279 , AKG A:1351 , HOH A:2050
BINDING SITE FOR RESIDUE FE2 A1350
2
AC2
SOFTWARE
TYR A:145 , THR A:196 , HIS A:199 , ASP A:201 , ASN A:205 , PHE A:207 , LYS A:214 , HIS A:279 , ILE A:281 , ASN A:294 , TRP A:296 , FE2 A:1350 , HOH A:2050
BINDING SITE FOR RESIDUE AKG A1351
3
AC3
SOFTWARE
ARG A:138 , GLY A:140 , GLU A:141 , GLU A:142
BINDING SITE FOR RESIDUE SO4 A1352
4
AC4
SOFTWARE
LYS A:311 , ALA A:312 , HOH A:2104 , HOH A:2105 , HOH A:2106
BINDING SITE FOR RESIDUE SO4 A1353
5
AC5
SOFTWARE
ARG A:143 , GLU A:192 , GLY A:193 , LEU A:285 , ASN A:286
BINDING SITE FOR RESIDUE SO4 A1354
6
AC6
SOFTWARE
LYS A:99 , LEU A:101 , TYR A:230 , SER A:240 , GLN A:241 , VAL A:242 , ASP A:243 , HOH A:2107
BINDING SITE FOR RESIDUE GOL A1355
7
AC7
SOFTWARE
GLU A:225 , ALA A:312 , LYS A:315 , HOH A:2105 , HOH A:2108 , HOH A:2109
BINDING SITE FOR RESIDUE GOL A1356
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051028 (P41A, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051028
P
41
A
HIF1N_HUMAN
Polymorphism
2295778
A
P
41
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: JMJC (A:142-312)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
JMJC
PS51184
JmjC domain profile.
HIF1N_HUMAN
142-312
1
A:142-312
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Exons
(8, 8)
Info
All Exons
Exon 1.2b (A:11-59)
Exon 1.3b (A:60-143)
Exon 1.4b (A:143-193)
Exon 1.5a (A:193-241)
Exon 1.6b (A:242-277)
Exon 1.7 (A:277-298)
Exon 1.8b (A:299-335)
Exon 1.9b (A:336-349)
View:
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All Exon Boundaries
1: Boundary -/1.2b
2: Boundary 1.2b/1.3b
3: Boundary 1.3b/1.4b
4: Boundary 1.4b/1.5a
5: Boundary 1.5a/1.6b
6: Boundary 1.6b/1.7
7: Boundary 1.7/1.8b
8: Boundary 1.8b/1.9b
9: Boundary 1.9b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000299163
2b
ENSE00001695622
chr10:
102295616-102295892
277
HIF1N_HUMAN
1-59
59
1
A:11-59
49
1.3b
ENST00000299163
3b
ENSE00001100126
chr10:
102296168-102296418
251
HIF1N_HUMAN
60-143
84
1
A:60-143
84
1.4b
ENST00000299163
4b
ENSE00001100124
chr10:
102300391-102300539
149
HIF1N_HUMAN
143-193
51
1
A:143-193
51
1.5a
ENST00000299163
5a
ENSE00001100127
chr10:
102304708-102304853
146
HIF1N_HUMAN
193-241
49
1
A:193-241
49
1.6b
ENST00000299163
6b
ENSE00001100128
chr10:
102305700-102305806
107
HIF1N_HUMAN
242-277
36
1
A:242-277
36
1.7
ENST00000299163
7
ENSE00001100132
chr10:
102306275-102306338
64
HIF1N_HUMAN
277-298
22
1
A:277-298
22
1.8b
ENST00000299163
8b
ENSE00001100130
chr10:
102306897-102307007
111
HIF1N_HUMAN
299-335
37
1
A:299-335
37
1.9b
ENST00000299163
9b
ENSE00001212367
chr10:
102307850-102309763
1914
HIF1N_HUMAN
336-349
14
1
A:336-349
14
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2y0ia_ (A:)
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Protein Domains
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
Clavaminate synthase-like
(197)
Family
:
Hypoxia-inducible factor HIF ihhibitor (FIH1)
(26)
Protein domain
:
Hypoxia-inducible factor HIF ihhibitor (FIH1)
(26)
Human (Homo sapiens) [TaxId: 9606]
(26)
1a
d2y0ia_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_Ank_2y0iS01 (S:540-553)
2a: PFAM_Ank_2_2y0iS02 (S:540-553)
3a: PFAM_Cupin_8_2y0iA01 (A:48-302)
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)
Clan
:
Ank
(35)
Family
:
Ank
(23)
Homo sapiens (Human)
(14)
1a
Ank-2y0iS01
S:540-553
Family
:
Ank_2
(14)
Homo sapiens (Human)
(8)
2a
Ank_2-2y0iS02
S:540-553
Clan
:
Cupin
(179)
Family
:
Cupin_8
(14)
Homo sapiens (Human)
(14)
3a
Cupin_8-2y0iA01
A:48-302
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Asymmetric Unit 1
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