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2XZ5
Asym. Unit
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Asym.Unit (370 KB)
Biol.Unit 1 (361 KB)
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(1)
Title
:
MMTS-MODIFIED Y53C MUTANT OF APLYSIA ACHBP IN COMPLEX WITH ACETYLCHOLINE
Authors
:
M. Brams, E. A. Gay, J. Colon Saez, A. Guskov, R. Van Elk, R. C. Van Der S. Peigneur, J. Tytgat, S. V. Strelkov, A. B. Smit, J. L. Yakel, C. Ulens
Date
:
23 Nov 10 (Deposition) - 08 Dec 10 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Receptor, Amidation, Conformational Flexibility, Conotoxin, Neurotoxinnicotinic, Postsynaptic Neurotoxin, Receptor/Toxin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Brams, E. A. Gay, J. Colon Saez, A. Guskov, R. Van Elk, R. C. Van Der Schors, S. Peigneur, J. Tytgat, S. V. Strelkov, A. B. Smit, J. L. Yakel, C. Ulens
Crystal Structures Of A Cysteine-Modified Mutant In Loop D Of Acetylcholine Binding Protein
J. Biol. Chem. V. 286 4420 2011
[
close entry info
]
Hetero Components
(6, 39)
Info
All Hetero Components
1a: ACETYLCHOLINE (ACHa)
1b: ACETYLCHOLINE (ACHb)
1c: ACETYLCHOLINE (ACHc)
1d: ACETYLCHOLINE (ACHd)
1e: ACETYLCHOLINE (ACHe)
1f: ACETYLCHOLINE (ACHf)
1g: ACETYLCHOLINE (ACHg)
1h: ACETYLCHOLINE (ACHh)
1i: ACETYLCHOLINE (ACHi)
1j: ACETYLCHOLINE (ACHj)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
3e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
3f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
3g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
5c: PHOSPHATE ION (PO4c)
5d: PHOSPHATE ION (PO4d)
5e: PHOSPHATE ION (PO4e)
5f: PHOSPHATE ION (PO4f)
5g: PHOSPHATE ION (PO4g)
5h: PHOSPHATE ION (PO4h)
5i: PHOSPHATE ION (PO4i)
5j: PHOSPHATE ION (PO4j)
6a: S-METHYL-THIO-CYSTEINE (SCHa)
6b: S-METHYL-THIO-CYSTEINE (SCHb)
6c: S-METHYL-THIO-CYSTEINE (SCHc)
6d: S-METHYL-THIO-CYSTEINE (SCHd)
6e: S-METHYL-THIO-CYSTEINE (SCHe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACH
10
Ligand/Ion
ACETYLCHOLINE
2
CL
5
Ligand/Ion
CHLORIDE ION
3
MPD
7
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
4
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
PO4
10
Ligand/Ion
PHOSPHATE ION
6
SCH
5
Mod. Amino Acid
S-METHYL-THIO-CYSTEINE
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:145 , TYR A:186 , TYR A:193 , ACH A:1211 , ILE B:116 , HOH B:2028
BINDING SITE FOR RESIDUE ACH A1210
02
AC2
SOFTWARE
TRP A:145 , TYR A:186 , SER A:187 , CYS A:188 , ACH A:1210
BINDING SITE FOR RESIDUE ACH A1211
03
AC3
SOFTWARE
TYR A:147
BINDING SITE FOR RESIDUE CL A1212
04
AC4
SOFTWARE
LYS A:40 , ASP A:49 , SER A:122 , PO4 A:1214 , HOH A:2046 , HOH A:2047 , ARG C:95
BINDING SITE FOR RESIDUE PO4 A1213
05
AC5
SOFTWARE
ARG A:95 , PO4 A:1213 , HOH A:2049 , LYS B:40
BINDING SITE FOR RESIDUE PO4 A1214
06
AC6
SOFTWARE
LYS A:8 , LEU A:11 , PHE A:12 , LEU A:63 , THR A:78 , ASP A:82 , ILE A:83
BINDING SITE FOR RESIDUE MPD A1215
07
AC7
SOFTWARE
TYR B:91 , TRP B:145 , TYR B:186 , CYS B:189 , TYR B:193 , HOH B:2050 , ILE E:116
BINDING SITE FOR RESIDUE ACH B1210
08
AC8
SOFTWARE
TYR B:186 , CYS B:188 , GLN E:36 , SCH E:53 , ILE E:116 , SER E:165
BINDING SITE FOR RESIDUE ACH B1211
09
AC9
SOFTWARE
TYR B:147
BINDING SITE FOR RESIDUE CL B1212
10
BC1
SOFTWARE
ARG A:95 , LYS B:40 , ASP B:49 , ARG B:120 , SER B:122 , PO4 B:1214 , HOH B:2015 , HOH B:2025
BINDING SITE FOR RESIDUE PO4 B1213
11
BC2
SOFTWARE
HOH A:2049 , LYS B:40 , ARG B:95 , PO4 B:1213 , HOH B:2025 , LYS E:40 , HOH E:2060
BINDING SITE FOR RESIDUE PO4 B1214
12
BC3
SOFTWARE
LYS B:8 , PHE B:12 , PHE B:76 , THR B:78 , ASP B:82 , ILE B:83
BINDING SITE FOR RESIDUE MPD B1215
13
BC4
SOFTWARE
GLY B:149 , PHE B:150 , ASP C:24
BINDING SITE FOR RESIDUE MPD B1216
14
BC5
SOFTWARE
HOH A:2019 , TYR C:91 , TRP C:145 , VAL C:146 , TYR C:186 , CYS C:189 , TYR C:193 , ACH C:1211
BINDING SITE FOR RESIDUE ACH C1210
15
BC6
SOFTWARE
THR A:34 , GLN A:36 , SCH A:53 , SER A:165 , HOH A:2011 , TYR C:91 , TYR C:186 , CYS C:188 , ACH C:1210
BINDING SITE FOR RESIDUE ACH C1211
16
BC7
SOFTWARE
LYS A:40 , HOH A:2047 , GLU C:47 , ARG C:95 , PO4 C:1213 , HOH C:2014
BINDING SITE FOR RESIDUE PO4 C1212
17
BC8
SOFTWARE
LYS C:40 , ASP C:49 , ARG C:95 , PO4 C:1212 , HOH C:2041 , ARG D:95 , PO4 D:1212
BINDING SITE FOR RESIDUE PO4 C1213
18
BC9
SOFTWARE
LYS C:8 , LEU C:11 , PHE C:12 , LEU C:63 , THR C:78 , ASP C:82 , ILE C:83
BINDING SITE FOR RESIDUE MPD C1214
19
CC1
SOFTWARE
TYR D:91 , TRP D:145 , VAL D:146 , TYR D:186 , CYS D:189 , TYR D:193
BINDING SITE FOR RESIDUE ACH D1210
20
CC2
SOFTWARE
GLN C:36 , SCH C:53 , SER C:165 , TYR D:91 , SER D:187 , CYS D:188
BINDING SITE FOR RESIDUE ACH D1211
21
CC3
SOFTWARE
LYS C:40 , PO4 C:1213 , HOH C:2025 , LYS D:40 , ARG D:95 , PO4 D:1213
BINDING SITE FOR RESIDUE PO4 D1212
22
CC4
SOFTWARE
LYS D:40 , ASP D:49 , SER D:122 , PO4 D:1212 , ARG E:95 , PO4 E:1214
BINDING SITE FOR RESIDUE PO4 D1213
23
CC5
SOFTWARE
LYS D:8 , LEU D:11 , PHE D:12 , ASP D:82
BINDING SITE FOR RESIDUE MPD D1214
24
CC6
SOFTWARE
VAL D:161 , ASP D:162 , LEU D:163 , SER D:164
BINDING SITE FOR RESIDUE MPD D1215
25
CC7
SOFTWARE
GLY D:71 , ASN D:72 , NAG D:1217
BINDING SITE FOR RESIDUE NAG D1216
26
CC8
SOFTWARE
NAG D:1216
BINDING SITE FOR RESIDUE NAG D1217
27
CC9
SOFTWARE
ILE D:116 , TYR E:91 , SER E:144 , TRP E:145 , VAL E:146 , TYR E:186 , CYS E:189 , TYR E:193 , ACH E:1211 , HOH E:2057
BINDING SITE FOR RESIDUE ACH E1210
28
DC1
SOFTWARE
SCH D:53 , TYR E:91 , TYR E:186 , CYS E:188 , ACH E:1210
BINDING SITE FOR RESIDUE ACH E1211
29
DC2
SOFTWARE
TRP E:84 , TYR E:147
BINDING SITE FOR RESIDUE CL E1212
30
DC3
SOFTWARE
ARG B:95 , LYS E:40 , ASP E:49 , SER E:122 , PO4 E:1214
BINDING SITE FOR RESIDUE PO4 E1213
31
DC4
SOFTWARE
LYS D:40 , PO4 D:1213 , ARG E:95 , PO4 E:1213 , HOH E:2022 , HOH E:2059 , HOH E:2060
BINDING SITE FOR RESIDUE PO4 E1214
32
DC5
SOFTWARE
LYS E:8 , LEU E:11 , PHE E:12 , LEU E:63 , PHE E:76 , THR E:78 , ASP E:82 , ILE E:83
BINDING SITE FOR RESIDUE MPD E1215
33
DC6
SOFTWARE
TYR C:147
BINDING SITE FOR RESIDUE CL C1215
34
DC7
SOFTWARE
TYR D:147
BINDING SITE FOR RESIDUE CL D1218
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d2xz5a_ (A:)
1b: SCOP_d2xz5b_ (B:)
1c: SCOP_d2xz5c_ (C:)
1d: SCOP_d2xz5d_ (D:)
1e: SCOP_d2xz5e_ (E:)
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Classes
(
)
(
)
Folds
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)
(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Nicotinic receptor ligand binding domain-like
(58)
Superfamily
:
Nicotinic receptor ligand binding domain-like
(58)
Family
:
automated matches
(40)
Protein domain
:
automated matches
(40)
California sea hare (Aplysia californica) [TaxId: 6500]
(36)
1a
d2xz5a_
A:
1b
d2xz5b_
B:
1c
d2xz5c_
C:
1d
d2xz5d_
D:
1e
d2xz5e_
E:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_Neur_chan_LBD_2xz5E01 (E:4-206)
1b: PFAM_Neur_chan_LBD_2xz5E02 (E:4-206)
1c: PFAM_Neur_chan_LBD_2xz5E03 (E:4-206)
1d: PFAM_Neur_chan_LBD_2xz5E04 (E:4-206)
1e: PFAM_Neur_chan_LBD_2xz5E05 (E:4-206)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Neur_chan_LBD]
(30)
Family
:
Neur_chan_LBD
(30)
Aplysia californica (California sea hare)
(19)
1a
Neur_chan_LBD-2xz5E01
E:4-206
1b
Neur_chan_LBD-2xz5E02
E:4-206
1c
Neur_chan_LBD-2xz5E03
E:4-206
1d
Neur_chan_LBD-2xz5E04
E:4-206
1e
Neur_chan_LBD-2xz5E05
E:4-206
[
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]
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