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2XYU
Asym. Unit
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Asym.Unit (51 KB)
Biol.Unit 1 (47 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF EPHA4 KINASE DOMAIN IN COMPLEX WITH VUF 12058
Authors
:
C. J. A. Farenc, P. H. N. Celie, O. P. J. Vanlinden, G. Siegal
Date
:
19 Nov 10 (Deposition) - 30 Nov 11 (Release) - 01 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.12
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Signaling Protein, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
O. P. Van Linden, C. J. A. Farenc, W. H. Zoutman, L. Hameetman, M. Wijtmans, R. Leurs, C. P. Tensen, G. Siegal, I. J. De Esch
Fragment Based Lead Discovery Of Small Molecule Inhibitors For The Epha4 Receptor Tyrosine Kinase.
Eur. J. Med. Chem. V. 47 493 2012
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
2a: 5-(5-FLUORO-2-METHYLPHENYL)-6,7,8,... (Q9Ga)
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No.
Name
Count
Type
Full Name
1
GOL
6
Ligand/Ion
GLYCEROL
2
Q9G
1
Ligand/Ion
5-(5-FLUORO-2-METHYLPHENYL)-6,7,8,9-TETRAHYDRO-3H-PYRAZOLO[3,4-C]ISOQUINOLIN-1-AMINE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:718 , VAL A:720 , MET A:818 , TYR A:820 , ASP A:848 , ASN A:884 , HOH A:2091 , HOH A:2104 , HOH A:2132
BINDING SITE FOR RESIDUE GOL A1892
2
AC2
SOFTWARE
TYR A:742 , VAL A:743 , HOH A:2133 , HOH A:2134
BINDING SITE FOR RESIDUE GOL A1893
3
AC3
SOFTWARE
ARG A:842 , LEU A:858 , TRP A:861 , GLN A:862 , HOH A:2135
BINDING SITE FOR RESIDUE GOL A1894
4
AC4
SOFTWARE
LYS A:656 , ALA A:657 , GLY A:658 , TYR A:659 , HIS A:854
BINDING SITE FOR RESIDUE GOL A1895
5
AC5
SOFTWARE
ARG A:789 , ARG A:823 , SER A:829 , ASN A:830
BINDING SITE FOR RESIDUE GOL A1896
6
AC6
SOFTWARE
CYS A:692 , LYS A:693 , ASP A:832 , LYS A:835
BINDING SITE FOR RESIDUE GOL A1897
7
AC7
SOFTWARE
ALA A:651 , LYS A:653 , MET A:674 , THR A:699 , GLU A:700 , TYR A:701 , MET A:702 , LEU A:753 , SER A:763 , ASP A:764 , HOH A:2136
BINDING SITE FOR RESIDUE Q9G A1898
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:627-653)
2: PROTEIN_KINASE_TYR (A:742-754)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
EPHA4_MOUSE
627-653
1
A:627-653
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
EPHA4_MOUSE
742-754
1
A:742-754
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2xyua_ (A:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Mouse (Mus musculus) [TaxId: 10090]
(33)
1a
d2xyua_
A:
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CATH Domains
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (51 KB)
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