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2XYM
Biol. Unit 1
Info
Asym.Unit (202 KB)
Biol.Unit 1 (392 KB)
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(1)
Title
:
HCV-JFH1 NS5B T385A MUTANT
Authors
:
P. C. Simister, C. Caillet-Saguy, S. Bressanelli
Date
:
18 Nov 10 (Deposition) - 12 Jan 11 (Release) - 06 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.77
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Transferase, Hepacivirus, Nonstructural Proteins, Replication, De Novo Initiation, Priming
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Schmitt, N. Scrima, D. Radujkovic, C. Caillet-Saguy, P. C. Simister, P. Friebe, O. Wicht, R. Klein, R. Bartenschlager, V. Lohmann, S. Bressanelli
A Comprehensive Structure-Function Comparison Of Hepatitis C Virus Strains Jfh1 And J6 Polymerases Reveals A Key Residue Stimulating Replication In Cell Culture Across Genotypes.
J. Virol. V. 85 2565 2011
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Hetero Components
(1, 14)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
1e: PHOSPHATE ION (PO4e)
1f: PHOSPHATE ION (PO4f)
1g: PHOSPHATE ION (PO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PO4
14
Ligand/Ion
PHOSPHATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:114 , GLU A:361 , ASN A:369 , VAL A:370 , SER A:371 , VAL A:372 , SER A:478 , HOH A:2556 , HOH A:2621 , HOH A:2622
BINDING SITE FOR RESIDUE PO4 A1564
2
AC2
SOFTWARE
ARG A:231 , ASP A:437 , HOH A:2623 , HOH A:2624 , HOH A:2625 , HOH A:2626 , HOH A:2627
BINDING SITE FOR RESIDUE PO4 A1565
3
AC3
SOFTWARE
ARG A:114 , ASN A:117 , HIS A:480 , HOH A:2230 , HOH A:2488 , HOH A:2628
BINDING SITE FOR RESIDUE PO4 A1566
4
AC4
SOFTWARE
ARG A:48 , VAL A:52 , LEU A:159 , CYS A:223 , ASP A:225 , SER A:282 , HOH A:2009 , HOH A:2629 , HOH A:2630 , HOH A:2631
BINDING SITE FOR RESIDUE PO4 A1567
5
AC5
SOFTWARE
ARG A:48 , LYS A:51 , ARG A:222 , CYS A:223 , HOH A:2632 , HOH A:2633 , HOH A:2634
BINDING SITE FOR RESIDUE PO4 A1568
6
AC6
SOFTWARE
GLU A:19 , CYS A:39 , THR A:40 , THR A:41 , SER A:44 , LYS A:154 , HOH A:2288 , HOH A:2635
BINDING SITE FOR RESIDUE PO4 A1569
7
AC7
SOFTWARE
ARG A:523 , LYS A:535 , LEU A:536 , THR A:537 , HOH A:2636
BINDING SITE FOR RESIDUE PO4 A1570
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RDRP_SSRNA_POS (A:214-332)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RDRP_SSRNA_POS
PS50507
RdRp of positive ssRNA viruses catalytic domain profile.
POLG_HCVJF
2656-2774
2
A:214-332
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2xyma_ (A:)
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
automated matches
(100)
Hepatitis C virus [TaxId: 356411]
(1)
1a
d2xyma_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_RdRP_3_2xymA01 (A:3-514)
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Clans
(
)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
RdRP
(210)
Family
:
RdRP_3
(43)
Hepatitis C virus genotype 2a (isolate JFH-1) (HCV)
(2)
1a
RdRP_3-2xymA01
A:3-514
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Atom Selection
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Nucleic
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (202 KB)
Header - Asym.Unit
Biol.Unit 1 (392 KB)
Header - Biol.Unit 1
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