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2XYD
Biol. Unit 2
Info
Asym.Unit (217 KB)
Biol.Unit 1 (107 KB)
Biol.Unit 2 (107 KB)
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(1)
Title
:
HUMAN ANGIOTENISN CONVERTING ENZYME N-DOMAIN IN COMPLEX WITH PHOSPHINIC TRIPEPTIDE
Authors
:
M. Akif, S. L. Schwager, C. S. Anthony, B. Czarny, F. Beau, V. Dive, E. D. S K. R. Acharya
Date
:
17 Nov 10 (Deposition) - 11 May 11 (Release) - 11 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Zinc Metallopeptidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Akif, S. L. Schwager, C. S. Anthony, B. Czarny, F. Beau, V. Dive, E. D. Sturrock, K. R. Acharya
Novel Mechanism Of Inhibition Of Human Angiotensin- I-Converting Enzyme (Ace) By A Highly Specific Phosphinic Tripeptide.
Biochem. J. V. 436 53 2011
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Hetero Components
(7, 11)
Info
All Hetero Components
1a: [(2S)-2-({3-[HYDROXYL(2-PHENYL-(1R... (3ESa)
1b: [(2S)-2-({3-[HYDROXYL(2-PHENYL-(1R... (3ESb)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
4a: ALPHA-L-FUCOSE (FUCa)
4b: ALPHA-L-FUCOSE (FUCb)
4c: ALPHA-L-FUCOSE (FUCc)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6a: HEXAETHYLENE GLYCOL (P6Ga)
7a: DI(HYDROXYETHYL)ETHER (PEGa)
7b: DI(HYDROXYETHYL)ETHER (PEGb)
7c: DI(HYDROXYETHYL)ETHER (PEGc)
7d: DI(HYDROXYETHYL)ETHER (PEGd)
8a: TETRAETHYLENE GLYCOL (PG4a)
8b: TETRAETHYLENE GLYCOL (PG4b)
9a: ZINC ION (ZNa)
9b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3ES
1
Ligand/Ion
[(2S)-2-({3-[HYDROXYL(2-PHENYL-(1R)-1-{[(BENZYLOXY)[(2S)-2-({3-[HYDROXYL(2-PHENYL-(1R)-1-CARBONYL]-AMINO}ETHYL)PHOSPHINYL]-2-[(3-PHENYLISOXAZOL-5-YL)METHYL]-1-OXO-PROPYL}AMINO)-3-(4-HYDROXY-PHENYL)
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
5
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
P6G
1
Ligand/Ion
HEXAETHYLENE GLYCOL
7
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
8
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
9
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(11, 11)
Info
All Sites
01: AC6 (SOFTWARE)
02: AC7 (SOFTWARE)
03: AC8 (SOFTWARE)
04: AC9 (SOFTWARE)
05: BC1 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC3 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC8 (SOFTWARE)
11: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
ARG A:453 , TYR A:465 , ARG B:453 , ASP B:462 , TYR B:465 , HOH B:2077
BINDING SITE FOR RESIDUE PG4 A1625
02
AC7
SOFTWARE
GLN B:259 , HIS B:331 , ALA B:332 , SER B:333 , ALA B:334 , THR B:358 , HIS B:361 , GLU B:362 , HIS B:365 , TYR B:369 , HIS B:388 , GLU B:389 , ASP B:393 , LYS B:489 , PHE B:490 , HIS B:491 , THR B:496 , TYR B:498 , TYR B:501 , PHE B:505 , ZN B:1619 , PEG B:1623 , HOH B:2066 , HOH B:2104 , HOH B:2105
BINDING SITE FOR RESIDUE 3ES B1611
03
AC8
SOFTWARE
HIS B:361 , HIS B:365 , GLU B:389 , 3ES B:1611
BINDING SITE FOR RESIDUE ZN B1619
04
AC9
SOFTWARE
TYR B:202 , PRO B:497 , ARG B:500 , HOH B:2027
BINDING SITE FOR RESIDUE CL B1620
05
BC1
SOFTWARE
GLN A:286 , GLY A:287 , HIS A:292 , GLN B:286 , GLY B:287 , HIS B:292 , P6G B:1622
BINDING SITE FOR RESIDUE PG4 B1621
06
BC2
SOFTWARE
ARG A:295 , ILE A:408 , ARG B:295 , VAL B:296 , PG4 B:1621
BINDING SITE FOR RESIDUE P6G B1622
07
BC3
SOFTWARE
TRP B:335 , 3ES B:1611
BINDING SITE FOR RESIDUE PEG B1623
08
BC6
SOFTWARE
ASN A:480 , THR A:482 , TYR A:607 , ARG B:245 , GLU B:596
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 480 RESIDUES 1612 TO 1613
09
BC7
SOFTWARE
ASN B:45 , THR B:47 , GLU B:49 , ASN B:50 , ARG B:53
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 45 RESIDUES 1614 TO 1615
10
BC8
SOFTWARE
ASN B:416 , GLU B:522 , PRO B:524 , GLN B:527
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 416 RESIDUES 1616 TO 1618
11
BC9
SOFTWARE
ARG A:245 , GLU A:596 , GLU B:161 , THR B:478 , ASN B:480 , THR B:482
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 480 RESIDUES 1612 TO 1613
[
close Site info
]
SAPs(SNPs)/Variants
(12, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_029139 (A125T, chain B, )
02: VAR_029140 (A154T, chain B, )
03: VAR_023430 (Y215C, chain B, )
04: VAR_054000 (R231C, chain B, )
05: VAR_054001 (R231L, chain B, )
06: VAR_011707 (A232S, chain B, )
07: VAR_023431 (P322L, chain B, )
08: VAR_035434 (G325R, chain B, )
09: VAR_029141 (R350Q, chain B, )
10: VAR_029142 (V495A, chain B, )
11: VAR_011708 (R532W, chain B, )
12: VAR_020053 (D563G, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_029139
A
154
T
ACE_HUMAN
Polymorphism
13306087
B
A
125
T
02
UniProt
VAR_029140
A
183
T
ACE_HUMAN
Polymorphism
12720754
B
A
154
T
03
UniProt
VAR_023430
Y
244
C
ACE_HUMAN
Polymorphism
3730025
B
Y
215
C
04
UniProt
VAR_054000
R
260
C
ACE_HUMAN
Polymorphism
4302
B
R
231
C
05
UniProt
VAR_054001
R
260
L
ACE_HUMAN
Polymorphism
4303
B
R
231
L
06
UniProt
VAR_011707
A
261
S
ACE_HUMAN
Polymorphism
4303
B
A
232
S
07
UniProt
VAR_023431
P
351
L
ACE_HUMAN
Polymorphism
2229839
B
P
322
L
08
UniProt
VAR_035434
G
354
R
ACE_HUMAN
Polymorphism
56394458
B
G
325
R
09
UniProt
VAR_029141
R
379
Q
ACE_HUMAN
Polymorphism
13306085
B
R
350
Q
10
UniProt
VAR_029142
V
524
A
ACE_HUMAN
Polymorphism
12720746
B
V
495
A
11
UniProt
VAR_011708
R
561
W
ACE_HUMAN
Polymorphism
4314
B
R
532
W
12
UniProt
VAR_020053
D
592
G
ACE_HUMAN
Polymorphism
12709426
B
D
563
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (B:358-367|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
ACE_HUMAN
387-396
985-994
1
-
B:358-367
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2xyda_ (A:)
1b: SCOP_d2xydb_ (B:)
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Classes
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Human (Homo sapiens) [TaxId: 9606]
(22)
1a
d2xyda_
A:
1b
d2xydb_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Peptidase_M2_2xydB01 (B:605-610)
1b: PFAM_Peptidase_M2_2xydB02 (B:605-610)
1c: PFAM_Peptidase_M2_2xydB03 (B:605-610)
1d: PFAM_Peptidase_M2_2xydB04 (B:605-610)
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Clans
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(
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Organisms
(
)
(
)
Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M2
(20)
Homo sapiens (Human)
(10)
1a
Peptidase_M2-2xydB01
B:605-610
1b
Peptidase_M2-2xydB02
B:605-610
1c
Peptidase_M2-2xydB03
B:605-610
1d
Peptidase_M2-2xydB04
B:605-610
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]
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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