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Getting 'Exon' information from database.
2XYC
Asym. Unit
Info
Asym.Unit (59 KB)
Biol.Unit 1 (54 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NCAM2 IGIV-FN3I
Authors
:
N. Kulahin, K. K. Rasmussen, O. Kristensen, V. Berezin, E. Bock, P. S. Wa M. Gajhede
Date
:
17 Nov 10 (Deposition) - 23 Feb 11 (Release) - 23 Feb 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.51
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Glycoprotein, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Kulahin, O. Kristensen, K. K. Rasmussen, L. Olsen, P. Rydberg, B. Vestergaard, J. S. Kastrup, V. Berezin, E. Bock, P. S. Walmod, M. Gajhede
Structural Model And Trans-Interaction Of The Entire Ectodomain Of The Olfactory Cell Adhesion Molecule.
Structure V. 19 203 2011
[
close entry info
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
PO4
3
Ligand/Ion
PHOSPHATE ION
[
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]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:309 , TYR A:394 , HOH A:2006
BINDING SITE FOR RESIDUE NAG A1500
2
AC2
SOFTWARE
ILE A:418 , ASN A:419 , TYR A:452 , GLU A:461 , LYS A:518 , HOH A:2128
BINDING SITE FOR RESIDUE NAG A1501
3
AC3
SOFTWARE
ARG A:435 , ASP A:437 , ASN A:474 , THR A:476 , PHE A:485 , GLU A:487 , HOH A:2177 , HOH A:2178
BINDING SITE FOR RESIDUE NAG A1502
4
AC4
SOFTWARE
TYR A:411 , ALA A:493 , ASP A:494 , VAL A:495 , PRO A:496 , SER A:497 , TRP A:542 , LYS A:582 , ILE A:583 , HOH A:2157 , HOH A:2179
BINDING SITE FOR RESIDUE EPE A1503
5
AC5
SOFTWARE
GLN A:306 , LYS A:308 , ASN A:448 , SER A:466 , ASN A:468 , HOH A:2148 , HOH A:2183
BINDING SITE FOR RESIDUE PO4 A1504
6
AC6
SOFTWARE
ARG A:436 , GLY A:471 , ARG A:472 , THR A:564 , HOH A:2137 , HOH A:2175 , HOH A:2180 , HOH A:2181
BINDING SITE FOR RESIDUE PO4 A1505
7
AC7
SOFTWARE
ARG A:436 , ASP A:469 , TYR A:473 , HOH A:2182 , HOH A:2183
BINDING SITE FOR RESIDUE PO4 A1506
[
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]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_047897 (D347N, chain A, )
2: VAR_047898 (L350P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_047897
D
347
N
NCAM2_HUMAN
Polymorphism
35654962
A
D
347
N
2
UniProt
VAR_047898
L
350
P
NCAM2_HUMAN
Polymorphism
232518
A
L
350
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FN3 (A:498-591|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
NCAM2_HUMAN
498-591
593-688
1
A:498-591
-
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Exons
(6, 6)
Info
All Exons
Exon 1.13b (A:301-348)
Exon 1.14b (A:349-399)
Exon 1.15 (A:399-461)
Exon 1.16 (A:462-494)
Exon 1.17 (A:494-552)
Exon 1.19 (A:552-591)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.12/1.13b
2: Boundary 1.13b/1.14b
3: Boundary 1.14b/1.15
4: Boundary 1.15/1.16
5: Boundary 1.16/1.17
6: Boundary 1.17/1.19
7: Boundary 1.19/1.20
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000400546
1
ENSE00001543472
chr21:
22370633-22370936
304
NCAM2_HUMAN
1-19
19
0
-
-
1.6
ENST00000400546
6
ENSE00001017047
chr21:
22652898-22652972
75
NCAM2_HUMAN
19-44
26
0
-
-
1.7
ENST00000400546
7
ENSE00001017039
chr21:
22656514-22656720
207
NCAM2_HUMAN
44-113
70
0
-
-
1.8
ENST00000400546
8
ENSE00001017049
chr21:
22658589-22658732
144
NCAM2_HUMAN
113-161
49
0
-
-
1.10b
ENST00000400546
10b
ENSE00001017037
chr21:
22664424-22664561
138
NCAM2_HUMAN
161-207
47
0
-
-
1.11
ENST00000400546
11
ENSE00001017040
chr21:
22696703-22696820
118
NCAM2_HUMAN
207-246
40
0
-
-
1.12
ENST00000400546
12
ENSE00001017034
chr21:
22707825-22707985
161
NCAM2_HUMAN
246-300
55
0
-
-
1.13b
ENST00000400546
13b
ENSE00001017033
chr21:
22710709-22710854
146
NCAM2_HUMAN
300-348
49
1
A:301-348
48
1.14b
ENST00000400546
14b
ENSE00001017041
chr21:
22746183-22746333
151
NCAM2_HUMAN
349-399
51
1
A:349-399
51
1.15
ENST00000400546
15
ENSE00001017045
chr21:
22782594-22782781
188
NCAM2_HUMAN
399-461
63
1
A:399-461
63
1.16
ENST00000400546
16
ENSE00001017052
chr21:
22790793-22790889
97
NCAM2_HUMAN
462-494
33
1
A:462-494
33
1.17
ENST00000400546
17
ENSE00001017031
chr21:
22804428-22804601
174
NCAM2_HUMAN
494-552
59
1
A:494-552
59
1.19
ENST00000400546
19
ENSE00001017043
chr21:
22838927-22839046
120
NCAM2_HUMAN
552-592
41
1
A:552-591
40
1.20
ENST00000400546
20
ENSE00001017051
chr21:
22840983-22841104
122
NCAM2_HUMAN
592-632
41
0
-
-
1.21
ENST00000400546
21
ENSE00001017035
chr21:
22849612-22849792
181
NCAM2_HUMAN
633-693
61
0
-
-
1.22
ENST00000400546
22
ENSE00001017048
chr21:
22881172-22881376
205
NCAM2_HUMAN
693-761
69
0
-
-
1.23
ENST00000400546
23
ENSE00001017044
chr21:
22906858-22906977
120
NCAM2_HUMAN
761-801
41
0
-
-
1.24b
ENST00000400546
24b
ENSE00001543443
chr21:
22910167-22915650
5484
NCAM2_HUMAN
801-837
37
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_fn3_2xycA01 (A:497-581)
2a: PFAM_I_set_2xycA02 (A:401-492)
2b: PFAM_I_set_2xycA03 (A:401-492)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
fn3
(66)
Homo sapiens (Human)
(52)
1a
fn3-2xycA01
A:497-581
Clan
:
Ig
(577)
Family
:
I-set
(67)
Homo sapiens (Human)
(50)
2a
I-set-2xycA02
A:401-492
2b
I-set-2xycA03
A:401-492
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Chain A
Asymmetric Unit 1
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