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Asym. Unit
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Asym.Unit (158 KB)
Biol.Unit 1 (152 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF IMPORTIN 13 - UBC9 COMPLEX
Authors
:
M. Gruenwald, F. Bono
Date
:
05 Nov 10 (Deposition) - 29 Dec 10 (Release) - 06 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ligase-Nuclear Protein Complex, Nuclear Import
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Gruenwald, F. Bono
Structure Of Importin13-Ubc9 Complex: Nuclear Import And Release Of A Key Regulator Of Sumoylation.
Embo J. V. 30 427 2011
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_CONJUGAT_2 (A:7-146)
2: IMPORTIN_B_NT (B:45-111)
3: UBIQUITIN_CONJUGAT_1 (A:82-97)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_CONJUGAT_2
PS50127
Ubiquitin-conjugating enzymes family profile.
UBC9_HUMAN
7-146
1
A:7-146
2
IMPORTIN_B_NT
PS50166
Importin-beta N-terminal domain profile.
IPO13_HUMAN
45-111
1
B:45-111
3
UBIQUITIN_CONJUGAT_1
PS00183
Ubiquitin-conjugating enzymes active site.
UBC9_HUMAN
82-97
1
A:82-97
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Exons
(6, 6)
Info
All Exons
Exon 1.4b (A:1-22)
Exon 1.5 (A:23-50)
Exon 1.6a (A:51-75)
Exon 1.7 (A:75-111)
Exon 1.8a (A:112-138)
Exon 1.9c (A:138-158)
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All Exon Boundaries
1: Boundary 1.3c/1.4b
2: Boundary 1.4b/1.5
3: Boundary 1.5/1.6a
4: Boundary 1.6a/1.7
5: Boundary 1.7/1.8a
6: Boundary 1.8a/1.9c
7: Boundary 1.9c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000397515
2b
ENSE00001529011
chr16:
1359636-1359774
139
UBC9_HUMAN
-
0
0
-
-
1.3c
ENST00000397515
3c
ENSE00001529008
chr16:
1362348-1362604
257
UBC9_HUMAN
-
0
0
-
-
1.4b
ENST00000397515
4b
ENSE00002200477
chr16:
1364021-1364097
77
UBC9_HUMAN
1-22
22
1
A:1-22
22
1.5
ENST00000397515
5
ENSE00000665751
chr16:
1364294-1364377
84
UBC9_HUMAN
23-50
28
1
A:23-50
28
1.6a
ENST00000397515
6a
ENSE00000873575
chr16:
1365655-1365727
73
UBC9_HUMAN
51-75
25
1
A:51-75
25
1.7
ENST00000397515
7
ENSE00000873577
chr16:
1370175-1370284
110
UBC9_HUMAN
75-111
37
1
A:75-111
37
1.8a
ENST00000397515
8a
ENSE00001287298
chr16:
1370439-1370518
80
UBC9_HUMAN
112-138
27
1
A:112-138
27
1.9c
ENST00000397515
9c
ENSE00001287274
chr16:
1374731-1377019
2289
UBC9_HUMAN
138-158
21
1
A:138-158
21
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2xwua_ (A:)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
UBC-like
(176)
Superfamily
:
UBC-like
(176)
Family
:
UBC-related
(135)
Protein domain
:
Ubiquitin conjugating enzyme, UBC
(84)
Human (Homo sapiens), ubc9 [TaxId: 9606]
(20)
1a
d2xwua_
A:
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CATH Domains
(0, 0)
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_IBN_N_2xwuB01 (B:45-111)
2a: PFAM_Xpo1_2xwuB02 (B:116-263)
3a: PFAM_UQ_con_2xwuA01 (A:8-152)
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Clan
:
TPR
(230)
Family
:
IBN_N
(25)
Homo sapiens (Human)
(16)
1a
IBN_N-2xwuB01
B:45-111
Family
:
Xpo1
(8)
Homo sapiens (Human)
(2)
2a
Xpo1-2xwuB02
B:116-263
Clan
:
UBC
(69)
Family
:
UQ_con
(55)
Homo sapiens (Human)
(36)
3a
UQ_con-2xwuA01
A:8-152
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