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2XWT
Asym. Unit
Info
Asym.Unit (128 KB)
Biol.Unit 1 (122 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE TSH RECEPTOR IN COMPLEX WITH A BLOCKING TYPE TSHR AUTOANTIBODY
Authors
:
J. Sanders, P. Sanders, S. Young, K. Kabelis, S. Baker, A. Sullivan, M. E J. Clark, J. Wilmot, X. Hu, E. Roberts, M. Powell, R. Nunez Miguel, J. F B. Rees Smith
Date
:
05 Nov 10 (Deposition) - 09 Mar 11 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Signaling Protein-Immune System Complex, Gpcr, Graves' Disease, Autoimmunity, Receptor-Autoantibody Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Sanders, S. Young, J. Sanders, K. Kabelis, S. Baker, A. Sullivan, M. Evans, J. Clark, J. Wilmot, X. Hu, E. Roberts, M. Powell, R. Nunez Miguel, J. Furmaniak, B. Rees Smith
Crystal Structure Of The Tsh Receptor (Tshr) Bound To A Blocking-Type Tshr Autoantibody.
J. Mol. Endocrinol. V. 46 81 2011
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: ALPHA-D-MANNOSE (MANa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:16 , THR C:150 , ASN C:177 , GLU C:178 , HOH C:403 , HOH C:425 , HOH C:509 , HOH C:401
BINDING SITE FOR RESIDUE NAG C1260
2
AC2
SOFTWARE
TYR C:98 , ASN C:99 , HOH C:410
BINDING SITE FOR RESIDUE NAG C1261
3
AC3
SOFTWARE
PRO C:52 , SER C:53 , ASN C:77 , HOH C:448 , HOH C:407 , HOH C:553 , HOH C:515 , HOH C:492 , HOH C:405 , HOH C:468
BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 77 RESIDUES 1258 TO 1259
4
AC4
SOFTWARE
ASN A:216 , THR A:217 , LYS A:218 , VAL C:169 , ASN C:170 , GLN C:173 , TYR C:195 , ASN C:198 , HOH C:406 , HOH C:477 , HOH C:428 , HOH C:460
BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 198 RESIDUES 1262 TO 1265
[
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]
SAPs(SNPs)/Variants
(11, 11)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_055925 (E34K, chain C, )
02: VAR_003564 (D36H, chain C, )
03: VAR_011519 (C41S, chain C, )
04: VAR_003565 (P52T, chain C, )
05: VAR_011520 (R109Q, chain C, )
06: VAR_011521 (P162A, chain C, )
07: VAR_011522 (I167N, chain C, )
08: VAR_003566 (K183R, chain C, )
09: VAR_003567 (F197I, chain C, )
10: VAR_003568 (D219E, chain C, )
11: VAR_021495 (L252P, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_055925
E
34
K
TSHR_HUMAN
Polymorphism
45499704
C
E
34
K
02
UniProt
VAR_003564
D
36
H
TSHR_HUMAN
Polymorphism
61747482
C
D
36
H
03
UniProt
VAR_011519
C
41
S
TSHR_HUMAN
Disease (CHNG1)
---
C
C
41
S
04
UniProt
VAR_003565
P
52
T
TSHR_HUMAN
Polymorphism
2234919
C
P
52
T
05
UniProt
VAR_011520
R
109
Q
TSHR_HUMAN
Disease (CHNG1)
---
C
R
109
Q
06
UniProt
VAR_011521
P
162
A
TSHR_HUMAN
Disease (CHNG1)
121908863
C
P
162
A
07
UniProt
VAR_011522
I
167
N
TSHR_HUMAN
Disease (CHNG1)
---
C
I
167
N
08
UniProt
VAR_003566
K
183
R
TSHR_HUMAN
Disease (HTFG)
---
C
K
183
R
09
UniProt
VAR_003567
F
197
I
TSHR_HUMAN
Unclassified
---
C
F
197
I
10
UniProt
VAR_003568
D
219
E
TSHR_HUMAN
Unclassified
---
C
D
219
E
11
UniProt
VAR_021495
L
252
P
TSHR_HUMAN
Disease (CHNG1)
---
C
L
252
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(9, 9)
Info
All Exons
Exon 1.1b (C:24-57)
Exon 1.2b (C:57-81)
Exon 1.3 (C:81-106)
Exon 1.4 (C:106-131)
Exon 1.5 (C:131-156)
Exon 1.6 (C:156-182)
Exon 1.7 (C:182-205)
Exon 1.8 (C:205-231)
Exon 1.10 (C:231-257)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.2b
03: Boundary 1.2b/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.10
10: Boundary 1.10/1.11a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000298171
1b
ENSE00001274344
chr14:
81421869-81422194
326
TSHR_HUMAN
1-57
57
1
C:24-57
34
1.2b
ENST00000298171
2b
ENSE00001135626
chr14:
81528492-81528563
72
TSHR_HUMAN
57-81
25
1
C:57-81
25
1.3
ENST00000298171
3
ENSE00001092839
chr14:
81534598-81534672
75
TSHR_HUMAN
81-106
26
1
C:81-106
26
1.4
ENST00000298171
4
ENSE00001135605
chr14:
81554298-81554372
75
TSHR_HUMAN
106-131
26
1
C:106-131
26
1.5
ENST00000298171
5
ENSE00001315993
chr14:
81557413-81557487
75
TSHR_HUMAN
131-156
26
1
C:131-156
26
1.6
ENST00000298171
6
ENSE00001092852
chr14:
81558875-81558952
78
TSHR_HUMAN
156-182
27
1
C:156-182
27
1.7
ENST00000298171
7
ENSE00001311920
chr14:
81562983-81563051
69
TSHR_HUMAN
182-205
24
1
C:182-205
24
1.8
ENST00000298171
8
ENSE00001135568
chr14:
81574719-81574796
78
TSHR_HUMAN
205-231
27
1
C:205-231
27
1.10
ENST00000298171
10
ENSE00001318726
chr14:
81606023-81606211
189
TSHR_HUMAN
231-294
64
1
C:231-257
27
1.11a
ENST00000298171
11a
ENSE00001328054
chr14:
81609284-81612646
3363
TSHR_HUMAN
294-764
471
0
-
-
[
close EXON info
]
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2xwtb1 (B:2-107)
2a: SCOP_d2xwtb2 (B:108-213)
3a: SCOP_d2xwtc_ (C:)
View:
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(
)
(
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Folds
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(
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Superfamilies
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d2xwtb1
B:2-107
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
2a
d2xwtb2
B:108-213
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
L domain-like
(93)
Family
:
automated matches
(23)
Protein domain
:
automated matches
(23)
Human (Homo sapiens) [TaxId: 9606]
(11)
3a
d2xwtc_
C:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_LRR_8_2xwtC01 (C:52-114)
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Clans
(
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Families
(
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(
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Organisms
(
)
(
)
Clan
:
LRR
(77)
Family
:
LRR_8
(41)
Homo sapiens (Human)
(24)
1a
LRR_8-2xwtC01
C:52-114
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]
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Protein & NOT PROSITE
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Chain C
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