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2XVZ
Biol. Unit 1
Info
Asym.Unit (52 KB)
Biol.Unit 1 (179 KB)
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(1)
Title
:
COBALT CHELATASE CBIK (PERIPLASMATIC) FROM DESULVOBRIO VULGARIS HILDENBOROUGH (CO-CRYSTALLIZED WITH COBALT)
Authors
:
C. V. Romao, S. A. L. Lobo, M. A. Carrondo, L. M. Saraiva, P. M. Matias
Date
:
28 Oct 10 (Deposition) - 22 Dec 10 (Release) - 16 Feb 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. V. Romao, D. Ladakis, S. A. L. Lobo, M. A. Carrondo, A. A. Brindley, E. Deery, P. M. Matias, R. W. Pickersgill, L. M. Saraiva, M. J. Warren
Evolution In A Family Of Chelatases Facilitated By The Introduction Of Active Site Asymmetry And Protein Oligomerization.
Proc. Natl. Acad. Sci. Usa V. 108 97 2011
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Hetero Components
(4, 52)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: COBALT (II) ION (COa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
5a: SODIUM ION (NAa)
6a: PEROXIDE ION (PERa)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
7c: SULFATE ION (SO4c)
7d: SULFATE ION (SO4d)
7e: SULFATE ION (SO4e)
7f: SULFATE ION (SO4f)
7g: SULFATE ION (SO4g)
7h: SULFATE ION (SO4h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
CO
-1
Ligand/Ion
COBALT (II) ION
3
GOL
12
Ligand/Ion
GLYCEROL
4
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
NA
-1
Ligand/Ion
SODIUM ION
6
PER
4
Ligand/Ion
PEROXIDE ION
7
SO4
32
Ligand/Ion
SULFATE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:91 , HIS A:96 , LEU A:99 , LEU A:119 , PRO A:159 , HOH A:2040 , HOH A:2105
BINDING SITE FOR RESIDUE HEM A1270
02
AC2
SOFTWARE
HIS A:154 , GLU A:184 , HIS A:216 , PER A:1285 , HOH A:2106
BINDING SITE FOR RESIDUE CO A1271
03
AC3
SOFTWARE
GLY A:92 , GLU A:93 , GLU A:94 , THR A:156 , HIS A:158 , HOH A:2037 , HOH A:2055 , HOH A:2107
BINDING SITE FOR RESIDUE SO4 A1272
04
AC4
SOFTWARE
PHE A:17 , LEU A:87 , HIS A:88 , THR A:89 , MET A:210 , ALA A:211 , NA A:1283 , HOH A:2108
BINDING SITE FOR RESIDUE SO4 A1273
05
AC5
SOFTWARE
ARG A:114 , VAL A:115 , SER A:116 , VAL A:117 , ARG A:267
BINDING SITE FOR RESIDUE SO4 A1274
06
AC6
SOFTWARE
LEU A:174 , ASP A:175 , ASP A:197 , ARG A:236 , HOH A:2065
BINDING SITE FOR RESIDUE GOL A1275
07
AC7
SOFTWARE
TRP A:172 , PRO A:176 , ARG A:199
BINDING SITE FOR RESIDUE GOL A1276
08
AC8
SOFTWARE
THR A:49 , LYS A:51 , MET A:52 , GLU A:94
BINDING SITE FOR RESIDUE GOL A1277
09
AC9
SOFTWARE
PRO A:140 , ALA A:141 , HOH A:2109
BINDING SITE FOR RESIDUE SO4 A1278
10
BC1
SOFTWARE
SER A:250 , ASP A:251 , ALA A:252
BINDING SITE FOR RESIDUE SO4 A1279
11
BC2
SOFTWARE
THR A:19 , SER A:20 , VAL A:21 , ASP A:215 , SO4 A:1281 , HOH A:2110
BINDING SITE FOR RESIDUE SO4 A1280
12
BC3
SOFTWARE
GLY A:214 , ASP A:215 , HIS A:216 , SO4 A:1280 , HOH A:2106 , HOH A:2110 , HOH A:2111
BINDING SITE FOR RESIDUE SO4 A1281
13
BC4
SOFTWARE
PRO A:43 , VAL A:44 , ARG A:45 , HOH A:2112
BINDING SITE FOR RESIDUE SO4 A1282
14
BC5
SOFTWARE
GLY A:153 , HIS A:154 , TYR A:164 , SO4 A:1273
BINDING SITE FOR RESIDUE NA A1283
15
BC6
SOFTWARE
HIS A:154 , GLU A:184 , HIS A:216 , CO A:1271
BINDING SITE FOR RESIDUE PER A1285
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2xvza_ (A:)
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Classes
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)
Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Chelatase-like
(149)
Superfamily
:
Chelatase
(46)
Family
:
automated matches
(3)
Protein domain
:
automated matches
(3)
Desulfovibrio vulgaris [TaxId: 882]
(3)
1a
d2xvza_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_CbiK_2xvzA01 (A:10-266)
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Clans
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Clan
:
Chelatase
(20)
Family
:
CbiK
(4)
Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)
(2)
1a
CbiK-2xvzA01
A:10-266
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Chain A
Asymmetric Unit 1
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Asym.Unit (52 KB)
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