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2XVX
Biol. Unit 1
Info
Asym.Unit (56 KB)
Biol.Unit 1 (191 KB)
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(1)
Title
:
COBALT CHELATASE CBIK (PERIPLASMATIC) FROM DESULVOBRIO VULGARIS HILDENBOROUGH (NATIVE)
Authors
:
C. V. Romao, S. A. L. Lobo, M. A. Carrondo, L. M. Saraiva, P. M. Matias
Date
:
28 Oct 10 (Deposition) - 22 Dec 10 (Release) - 16 Feb 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. V. Romao, D. Ladakis, S. A. L. Lobo, M. A. Carrondo, A. A. Brindley, E. Deery, P. M. Matias, R. W. Pickersgill, L. M. Saraiva, M. J. Warren
Evolution In A Family Of Chelatases Facilitated By The Introduction Of Active Site Asymmetry And Protein Oligomerization.
Proc. Natl. Acad. Sci. Usa V. 108 97 2011
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Hetero Components
(4, 68)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: CARBON DIOXIDE (CO2a)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
5a: SODIUM ION (NAa)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
CO2
4
Ligand/Ion
CARBON DIOXIDE
3
GOL
40
Ligand/Ion
GLYCEROL
4
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
NA
-1
Ligand/Ion
SODIUM ION
6
SO4
20
Ligand/Ion
SULFATE ION
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:91 , GLU A:93 , HIS A:96 , LEU A:99 , GLU A:100 , HIS A:103 , LEU A:119 , HIS A:158 , PRO A:159 , HOH A:2070 , HOH A:2200
BINDING SITE FOR RESIDUE HEM A1270
02
AC2
SOFTWARE
GLY A:92 , GLU A:93 , GLU A:94 , THR A:156 , HIS A:158 , HOH A:2069
BINDING SITE FOR RESIDUE SO4 A1271
03
AC3
SOFTWARE
HIS A:103 , ARG A:114 , VAL A:115 , SER A:116 , VAL A:117 , ARG A:267
BINDING SITE FOR RESIDUE SO4 A1272
04
AC4
SOFTWARE
LEU A:87 , HIS A:88 , THR A:89 , HIS A:154 , MET A:210 , ALA A:211 , NA A:1288 , HOH A:2202 , HOH A:2203
BINDING SITE FOR RESIDUE SO4 A1273
05
AC5
SOFTWARE
PRO A:43 , VAL A:44 , ARG A:45 , HOH A:2204
BINDING SITE FOR RESIDUE SO4 A1274
06
AC6
SOFTWARE
THR A:19 , SER A:20 , VAL A:21 , ILE A:53 , GLY A:214 , ASP A:215 , GOL A:1284
BINDING SITE FOR RESIDUE SO4 A1275
07
AC7
SOFTWARE
VAL A:136 , ARG A:143 , ASP A:175 , ASP A:197 , ARG A:236 , HOH A:2206
BINDING SITE FOR RESIDUE GOL A1276
08
AC8
SOFTWARE
THR A:49 , LYS A:51 , MET A:52
BINDING SITE FOR RESIDUE GOL A1277
09
AC9
SOFTWARE
LYS A:144 , ARG A:203 , GOL A:1279 , HOH A:2111
BINDING SITE FOR RESIDUE GOL A1278
10
BC1
SOFTWARE
LYS A:144 , ARG A:203 , GLU A:239 , GOL A:1278 , HOH A:2209
BINDING SITE FOR RESIDUE GOL A1279
11
BC2
SOFTWARE
GOL A:1285 , HOH A:2210 , HOH A:2211 , HOH A:2212
BINDING SITE FOR RESIDUE GOL A1280
12
BC3
SOFTWARE
PRO A:176 , ASP A:197 , VAL A:198 , HOH A:2206 , HOH A:2213
BINDING SITE FOR RESIDUE GOL A1281
13
BC4
SOFTWARE
SER A:250 , ASP A:251 , ALA A:252
BINDING SITE FOR RESIDUE GOL A1282
14
BC5
SOFTWARE
PRO A:176 , ARG A:199
BINDING SITE FOR RESIDUE GOL A1283
15
BC6
SOFTWARE
PHE A:17 , HIS A:154 , GLY A:214 , ASP A:215 , HIS A:216 , SO4 A:1275
BINDING SITE FOR RESIDUE GOL A1284
16
BC7
SOFTWARE
ARG A:58 , ILE A:62 , GOL A:1280 , HOH A:2214 , HOH A:2215
BINDING SITE FOR RESIDUE GOL A1285
17
BC8
SOFTWARE
GLU A:184 , HIS A:216 , HOH A:2217
BINDING SITE FOR RESIDUE CO2 A1286
18
BC9
SOFTWARE
ALA A:141
BINDING SITE FOR RESIDUE CL A1287
19
CC1
SOFTWARE
THR A:89 , GLY A:153 , HIS A:154 , TYR A:164 , SO4 A:1273
BINDING SITE FOR RESIDUE NA A1288
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2xvxa_ (A:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Chelatase-like
(149)
Superfamily
:
Chelatase
(46)
Family
:
automated matches
(3)
Protein domain
:
automated matches
(3)
Desulfovibrio vulgaris [TaxId: 882]
(3)
1a
d2xvxa_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_CbiK_2xvxA01 (A:10-266)
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Clans
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(
)
Clan
:
Chelatase
(20)
Family
:
CbiK
(4)
Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)
(2)
1a
CbiK-2xvxA01
A:10-266
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Chain A
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Asymmetric Unit 3
Asymmetric Unit 4
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (56 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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