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2XVB
Asym. Unit
Info
Asym.Unit (98 KB)
Biol.Unit 1 (92 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LACCASE FROM THERMUS THERMOPHILUS HB27 COMPLEXED WITH HG, CRYSTAL OF THE APOENZYME SOAKED FOR 5 MIN. IN 5 MM HGCL2 AT 278 K.
Authors
:
H. Serrano-Posada, B. Valderrama, E. Rudino-Pinera
Date
:
25 Oct 10 (Deposition) - 26 Oct 11 (Release) - 16 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase, Multicopper Oxidases
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Serrano-Posada, S. Centeno-Leija, S. P. Rojas-Trejo, C. Rodriguez-Almazan, V. Stojanoff, E. Rudino-Pinera
X-Ray-Induced Catalytic Active-Site Reduction Of A Multicopper Oxidase: Structural Insights Into The Proton- Relay Mechanism And O2-Reduction States.
Acta Crystallogr. , Sect. D V. 71 2396 2015
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Hetero Components
(3, 22)
Info
All Hetero Components
1a: MERCURY (II) ION (HGa)
1b: MERCURY (II) ION (HGb)
1c: MERCURY (II) ION (HGc)
1d: MERCURY (II) ION (HGd)
1e: MERCURY (II) ION (HGe)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
2c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
2d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
2e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
2f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
2g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
2h: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDh)
2i: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDi)
2j: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDj)
2k: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDk)
3a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
3b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
3c: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDc)
3d: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDd)
3e: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDe)
3f: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HG
5
Ligand/Ion
MERCURY (II) ION
2
MPD
11
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
MRD
6
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:393 , CYS A:445 , HIS A:450 , MET A:455
BINDING SITE FOR RESIDUE HG A1463
02
AC2
SOFTWARE
HIS A:97 , TRP A:133 , HIS A:135 , HIS A:446 , HOH A:2434
BINDING SITE FOR RESIDUE HG A1464
03
AC3
SOFTWARE
HIS A:95 , HIS A:97 , HIS A:396 , HIS A:398
BINDING SITE FOR RESIDUE HG A1465
04
AC4
SOFTWARE
HIS A:137 , HIS A:398 , HIS A:444 , HOH A:2156 , HOH A:2434
BINDING SITE FOR RESIDUE HG A1466
05
AC5
SOFTWARE
MET A:296 , MET A:301 , HIS A:303 , MET A:305
BINDING SITE FOR RESIDUE HG A1467
06
AC6
SOFTWARE
ALA A:247 , ASP A:248 , LEU A:263 , GLU A:267 , ARG A:268 , TYR A:414 , LYS A:418 , MPD A:1479
BINDING SITE FOR RESIDUE MPD A1468
07
AC7
SOFTWARE
ARG A:280 , TYR A:317 , HOH A:2440 , HOH A:2442 , HOH A:2443
BINDING SITE FOR RESIDUE MPD A1469
08
AC8
SOFTWARE
GLN A:56 , LEU A:339 , HOH A:2055 , HOH A:2444
BINDING SITE FOR RESIDUE MRD A1470
09
AC9
SOFTWARE
PRO A:342 , VAL A:343 , VAL A:344 , THR A:345 , HOH A:2338
BINDING SITE FOR RESIDUE MRD A1471
10
BC1
SOFTWARE
ARG A:75 , PRO A:76 , GLU A:157 , SER A:158 , SER A:159 , HOH A:2173 , HOH A:2445
BINDING SITE FOR RESIDUE MPD A1472
11
BC2
SOFTWARE
GLY A:140 , TRP A:194 , ARG A:453 , MPD A:1474 , MPD A:1482
BINDING SITE FOR RESIDUE MPD A1473
12
BC3
SOFTWARE
PRO A:144 , PRO A:188 , HIS A:189 , TRP A:194 , MPD A:1473 , HOH A:2160 , HOH A:2198 , HOH A:2446
BINDING SITE FOR RESIDUE MPD A1474
13
BC4
SOFTWARE
GLY A:64 , PRO A:70 , HOH A:2068 , HOH A:2448
BINDING SITE FOR RESIDUE MPD A1475
14
BC5
SOFTWARE
PRO A:28 , GLU A:29 , PHE A:67 , ASN A:206 , HOH A:2047 , HOH A:2070 , HOH A:2072 , HOH A:2449
BINDING SITE FOR RESIDUE MRD A1476
15
BC6
SOFTWARE
PRO A:25 , SER A:26 , GLN A:216 , ASN A:362 , GLN A:364 , HOH A:2004 , HOH A:2006 , HOH A:2450
BINDING SITE FOR RESIDUE MPD A1477
16
BC7
SOFTWARE
ASP A:289 , GLY A:291 , ASP A:390 , MET A:391 , ASP A:392 , LYS A:424 , ALA A:425 , HOH A:2390 , HOH A:2414
BINDING SITE FOR RESIDUE MRD A1478
17
BC8
SOFTWARE
LEU A:256 , GLU A:260 , LEU A:261 , MPD A:1468 , HOH A:2452
BINDING SITE FOR RESIDUE MPD A1479
18
BC9
SOFTWARE
GLU A:127 , LEU A:128 , SER A:158 , SER A:159 , SER A:334 , HOH A:2453
BINDING SITE FOR RESIDUE MPD A1480
19
CC1
SOFTWARE
PRO A:241 , GLU A:257 , MRD A:1483 , HOH A:2262 , HOH A:2454
BINDING SITE FOR RESIDUE MPD A1481
20
CC2
SOFTWARE
PRO A:191 , MPD A:1473
BINDING SITE FOR RESIDUE MPD A1482
21
CC3
SOFTWARE
HIS A:240 , PRO A:241 , SER A:259 , ARG A:276 , MPD A:1481 , HOH A:2242 , HOH A:2264 , HOH A:2455
BINDING SITE FOR RESIDUE MRD A1483
22
CC4
SOFTWARE
MET A:192 , MET A:195 , MET A:354 , MET A:355
BINDING SITE FOR RESIDUE MRD A1484
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (98 KB)
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