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Asym. Unit
Info
Asym.Unit (303 KB)
Biol.Unit 1 (295 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN BETA ENOLASE ENOB
Authors
:
M. Vollmar, E. Krysztofinska, A. Chaikuad, T. Krojer, R. Cocking, F. Vo C. Bountra, C. H. Arrowsmith, J. Weigelt, A. Edwards, W. W. Yue, U. Oppe
Date
:
30 Sep 10 (Deposition) - 10 Nov 10 (Release) - 05 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Vollmar, E. Krysztofinska, A. Chaikuad, T. Krojer, R. Cocking, F. Von Delft, C. Bountra, C. H. Arrowsmith, J. Weigelt, A. Edwards, W. W. Yue, U. Oppermann
Crystal Structure Of Human Beta Enolase Enob
To Be Published
[
close entry info
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Hetero Components
(3, 23)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
19
Ligand/Ion
1,2-ETHANEDIOL
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
PO4
2
Ligand/Ion
PHOSPHATE ION
[
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:245 , GLU A:293 , ASP A:318 , HOH A:2267 , HOH A:2358 , HOH A:2506
BINDING SITE FOR RESIDUE MG A 500
02
AC2
SOFTWARE
GLU A:210 , LYS A:343 , ARG A:372 , SER A:373 , HOH A:2506 , HOH A:2542 , HOH A:2543
BINDING SITE FOR RESIDUE PO4 A 501
03
AC3
SOFTWARE
LYS A:193 , THR A:205 , VAL A:207 , HOH A:2544 , ASP B:209
BINDING SITE FOR RESIDUE EDO A 502
04
AC4
SOFTWARE
LYS A:202 , ASP A:203 , ALA A:204 , THR A:205 , ASN A:206 , GLY B:160 , HOH B:2301
BINDING SITE FOR RESIDUE EDO A 503
05
AC5
SOFTWARE
GLU A:219 , ASN A:220 , ASN A:221 , HOH A:2545
BINDING SITE FOR RESIDUE EDO A 504
06
AC6
SOFTWARE
GLY A:273 , GLU A:274 , GLY A:277 , PHE A:296 , THR A:303 , SER A:306 , PHE A:307 , HOH A:2396 , HOH A:2546
BINDING SITE FOR RESIDUE EDO A 505
07
AC7
SOFTWARE
GLU A:180 , ARG A:183 , ILE A:184 , TYR A:236 , HOH A:2547
BINDING SITE FOR RESIDUE EDO A 506
08
AC8
SOFTWARE
LYS A:202 , GLY A:310 , VAL A:311 , ASN A:312 , EDO A:508 , HOH A:2548 , PHE B:261 , LYS B:262
BINDING SITE FOR RESIDUE EDO A 507
09
AC9
SOFTWARE
LYS A:202 , VAL A:311 , ASN A:312 , EDO A:507 , HOH A:2549 , HOH A:2550 , LYS B:262 , SER B:263 , PRO B:264
BINDING SITE FOR RESIDUE EDO A 508
10
BC1
SOFTWARE
ALA A:302 , HOH A:2288 , HOH A:2553 , HOH A:2554 , HOH A:2555 , LEU B:58
BINDING SITE FOR RESIDUE EDO A 509
11
BC2
SOFTWARE
ASN A:338 , HOH A:2462 , HOH A:2556 , HOH A:2557
BINDING SITE FOR RESIDUE EDO A 510
12
BC3
SOFTWARE
GLU A:21 , ARG A:32 , ASP A:378 , HOH A:2558
BINDING SITE FOR RESIDUE EDO A 511
13
BC4
SOFTWARE
ASP B:245 , GLU B:293 , ASP B:318 , HOH B:2254 , HOH B:2336 , HOH B:2514
BINDING SITE FOR RESIDUE MG B 500
14
BC5
SOFTWARE
GLU B:210 , LYS B:343 , ARG B:372 , SER B:373 , HOH B:2514
BINDING SITE FOR RESIDUE PO4 B 501
15
BC6
SOFTWARE
GLY A:160 , HOH A:2318 , LYS B:202 , ASP B:203 , ALA B:204 , THR B:205 , ASN B:206
BINDING SITE FOR RESIDUE EDO B 502
16
BC7
SOFTWARE
GLU B:219 , ASN B:220 , ASN B:221 , HOH B:2515
BINDING SITE FOR RESIDUE EDO B 503
17
BC8
SOFTWARE
HIS B:191 , GLY B:194 , VAL B:195 , EDO B:510 , HOH B:2516 , HOH B:2517 , HOH B:2518
BINDING SITE FOR RESIDUE EDO B 504
18
BC9
SOFTWARE
GLU A:10 , HOH A:2015 , HOH A:2017 , LYS B:179 , GLU B:415 , HOH B:2264
BINDING SITE FOR RESIDUE EDO B 505
19
CC1
SOFTWARE
ASP A:209 , LYS B:193 , THR B:205 , ASN B:206 , HOH B:2519
BINDING SITE FOR RESIDUE EDO B 506
20
CC2
SOFTWARE
ASP B:142 , LEU B:143 , ILE B:144 , ILE B:422 , HOH B:2492 , HOH B:2520 , HOH B:2521
BINDING SITE FOR RESIDUE EDO B 507
21
CC3
SOFTWARE
GLU B:274 , PHE B:307 , HOH B:2522
BINDING SITE FOR RESIDUE EDO B 508
22
CC4
SOFTWARE
GLU B:180 , ARG B:183 , TYR B:236 , HOH B:2334 , HOH B:2523
BINDING SITE FOR RESIDUE EDO B 509
23
CC5
SOFTWARE
LEU A:58 , GLY B:194 , EDO B:504
BINDING SITE FOR RESIDUE EDO B 510
[
close Site info
]
SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_020618 (S71S, chain A/B, )
2: VAR_020619 (A85A, chain A/B, )
3: VAR_020620 (G156D, chain A/B, )
4: VAR_020621 (G374E, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020618
N
71
S
ENOB_HUMAN
Polymorphism
238238
A/B
S
71
S
2
UniProt
VAR_020619
V
85
A
ENOB_HUMAN
Polymorphism
238239
A/B
A
85
A
3
UniProt
VAR_020620
G
156
D
ENOB_HUMAN
Disease (GSD13)
121918403
A/B
G
156
D
4
UniProt
VAR_020621
G
374
E
ENOB_HUMAN
Disease (GSD13)
---
A/B
G
374
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ENOLASE (A:340-353,B:340-353)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ENOLASE
PS00164
Enolase signature.
ENOB_HUMAN
340-353
2
A:340-353
B:340-353
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2xsxa1 (A:1-140)
1b: SCOP_d2xsxb1 (B:0-140)
2a: SCOP_d2xsxa2 (A:141-434)
2b: SCOP_d2xsxb2 (B:141-434)
View:
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Classes
(
)
(
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Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
automated matches
(123)
Protein domain
:
automated matches
(123)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2xsxa1
A:1-140
1b
d2xsxb1
B:0-140
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
Enolase
(45)
Protein domain
:
automated matches
(6)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d2xsxa2
A:141-434
2b
d2xsxb2
B:141-434
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Enolase_N_2xsxB01 (B:2-134)
1b: PFAM_Enolase_N_2xsxB02 (B:2-134)
2a: PFAM_Enolase_C_2xsxB03 (B:142-432)
2b: PFAM_Enolase_C_2xsxB04 (B:142-432)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Enolase_N
(69)
Family
:
Enolase_N
(20)
Homo sapiens (Human)
(3)
1a
Enolase_N-2xsxB01
B:2-134
1b
Enolase_N-2xsxB02
B:2-134
Clan
:
Enolase_TIM
(82)
Family
:
Enolase_C
(20)
Homo sapiens (Human)
(3)
2a
Enolase_C-2xsxB03
B:142-432
2b
Enolase_C-2xsxB04
B:142-432
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]
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