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2XSC
Asym. Unit
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Asym.Unit (124 KB)
Biol.Unit 1 (119 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CELL-BINDING B OLIGOMER OF VEROTOXIN-1 FROM E. COLI
Authors
:
P. E. Stein, A. Boodhoo, G. J. Tyrrell, J. L. Brunton, R. D. Oeffner, G. Bu R. J. Read
Date
:
27 Sep 10 (Deposition) - 13 Oct 10 (Release) - 13 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Toxin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. E. Stein, A. Boodhoo, G. J. Tyrrell, J. L. Brunton, R. J. Read
Crystal Structure Of The Cell-Binding B Oligomer Of Verotoxin-1 From E. Coli.
Nature V. 355 748 1992
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Hetero Components
(1, 3)
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All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
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No.
Name
Count
Type
Full Name
1
ZN
3
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR B:1 , HOH B:2027 , HOH B:2028 , THR D:1
BINDING SITE FOR RESIDUE ZN B1070
2
AC2
SOFTWARE
THR C:1 , GLU C:65 , HOH C:2039
BINDING SITE FOR RESIDUE ZN C1070
3
AC3
SOFTWARE
THR E:1
BINDING SITE FOR RESIDUE ZN E1070
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d2xsca_ (A:)
1b: SCOP_d2xscb_ (B:)
1c: SCOP_d2xscc_ (C:)
1d: SCOP_d2xscd_ (D:)
1e: SCOP_d2xsce_ (E:)
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Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Bacterial enterotoxins
(188)
Family
:
Bacterial AB5 toxins, B-subunits
(85)
Protein domain
:
Verotoxin-1/shiga-toxin, B-pentamer
(19)
Escherichia coli [TaxId: 562]
(14)
1a
d2xsca_
A:
1b
d2xscb_
B:
1c
d2xscc_
C:
1d
d2xscd_
D:
1e
d2xsce_
E:
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CATH Domains
(0, 0 ; only for superseded entry 1BOV: 1,5)
Info
all CATH domains
1a: CATH_1bovA00 ()
1b: CATH_1bovB00 ()
1c: CATH_1bovC00 ()
1d: CATH_1bovD00 ()
1e: CATH_1bovE00 ()
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Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_SLT_beta_2xscE01 (E:1-69)
1b: PFAM_SLT_beta_2xscE02 (E:1-69)
1c: PFAM_SLT_beta_2xscE03 (E:1-69)
1d: PFAM_SLT_beta_2xscE04 (E:1-69)
1e: PFAM_SLT_beta_2xscE05 (E:1-69)
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Clan
:
no clan defined [family: SLT_beta]
(6)
Family
:
SLT_beta
(6)
Bacteriophage H30
(1)
1a
SLT_beta-2xscE01
E:1-69
1b
SLT_beta-2xscE02
E:1-69
1c
SLT_beta-2xscE03
E:1-69
1d
SLT_beta-2xscE04
E:1-69
1e
SLT_beta-2xscE05
E:1-69
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Asym.Unit (124 KB)
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