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Biol. Unit 4
Info
Asym.Unit (123 KB)
Biol.Unit 1 (117 KB)
Biol.Unit 2 (51 KB)
Biol.Unit 3 (50 KB)
Biol.Unit 4 (23 KB)
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(1)
Title
:
STRUCTURE OF FACTOR H DOMAINS 19-20 IN COMPLEX WITH COMPLEMENT C3D
Authors
:
T. Kajander, M. J. Lehtinen, S. Hyvarinen, A. Bhattacharjee, E. Leung, D. E. Isenman, S. Meri, T. S. Jokiranta, A. Goldman
Date
:
07 Sep 10 (Deposition) - 02 Feb 11 (Release) - 17 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Biol. Unit 4: C (1x)
Keywords
:
Immune System, Complement Alternative Pathway, Atypical Hemolytic Uremic Syndrome, Ahus, Cfh, Fh, C3B
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Kajander, M. J. Lehtinen, S. Hyvarinen, A. Bhattacharjee, E. Leung D. E. Isenman, S. Meri, A. Goldman, T. S. Jokiranta
Dual Interaction Of Factor H With C3D And Glycosaminoglycans In Host-Nonhost Discrimination By Complement.
Proc. Natl. Acad. Sci. Usa V. 108 2897 2011
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(21, 21)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_025874 (G1119G, chain C, )
02: VAR_025875 (V1134G, chain C, )
03: VAR_025876 (Y1142D, chain C, )
04: VAR_043896 (Q1143E, chain C, )
05: VAR_025877 (W1157R, chain C, )
06: VAR_025878 (C1163W, chain C, )
07: VAR_063650 (I1169L, chain C, )
08: VAR_063651 (W1183C, chain C, )
09: VAR_025879 (W1183L, chain C, )
10: VAR_025880 (W1183R, chain C, )
11: VAR_025881 (T1184R, chain C, )
12: VAR_019407 (L1189R, chain C, )
13: VAR_019408 (S1191L, chain C, )
14: VAR_025882 (G1194D, chain C, )
15: VAR_025883 (V1197A, chain C, )
16: VAR_025884 (E1198A, chain C, )
17: VAR_031986 (F1199S, chain C, )
18: VAR_025885 (R1210C, chain C, )
19: VAR_025886 (R1215G, chain C, )
20: VAR_025887 (R1215Q, chain C, )
21: VAR_025888 (P1226S, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
08
UniProt
VAR_025874
D
1119
G
CFAH_HUMAN
Disease (CFHD)
---
C
G
1119
G
09
UniProt
VAR_025875
V
1134
G
CFAH_HUMAN
Disease (AHUS1)
---
C
V
1134
G
10
UniProt
VAR_025876
Y
1142
D
CFAH_HUMAN
Disease (AHUS1)
---
C
Y
1142
D
11
UniProt
VAR_043896
Q
1143
E
CFAH_HUMAN
Polymorphism
34247141
C
Q
1143
E
12
UniProt
VAR_025877
W
1157
R
CFAH_HUMAN
Disease (AHUS1)
---
C
W
1157
R
13
UniProt
VAR_025878
C
1163
W
CFAH_HUMAN
Disease (AHUS1)
---
C
C
1163
W
14
UniProt
VAR_063650
I
1169
L
CFAH_HUMAN
Disease (AHUS1)
---
C
I
1169
L
15
UniProt
VAR_063651
W
1183
C
CFAH_HUMAN
Disease (AHUS1)
---
C
W
1183
C
16
UniProt
VAR_025879
W
1183
L
CFAH_HUMAN
Disease (AHUS1)
---
C
W
1183
L
17
UniProt
VAR_025880
W
1183
R
CFAH_HUMAN
Disease (AHUS1)
---
C
W
1183
R
18
UniProt
VAR_025881
T
1184
R
CFAH_HUMAN
Disease (CFHD)
---
C
T
1184
R
19
UniProt
VAR_019407
L
1189
R
CFAH_HUMAN
Disease (AHUS1)
---
C
L
1189
R
20
UniProt
VAR_019408
S
1191
L
CFAH_HUMAN
Disease (AHUS1)
460897
C
S
1191
L
21
UniProt
VAR_025882
G
1194
D
CFAH_HUMAN
Disease (AHUS1)
---
C
G
1194
D
22
UniProt
VAR_025883
V
1197
A
CFAH_HUMAN
Disease (AHUS1)
460184
C
V
1197
A
23
UniProt
VAR_025884
E
1198
A
CFAH_HUMAN
Disease (AHUS1)
---
C
E
1198
A
24
UniProt
VAR_031986
F
1199
S
CFAH_HUMAN
Disease (AHUS1)
---
C
F
1199
S
25
UniProt
VAR_025885
R
1210
C
CFAH_HUMAN
Disease (ARMD4)
---
C
R
1210
C
26
UniProt
VAR_025886
R
1215
G
CFAH_HUMAN
Disease (AHUS1)
---
C
R
1215
G
27
UniProt
VAR_025887
R
1215
Q
CFAH_HUMAN
Disease (CFHD)
---
C
R
1215
Q
28
UniProt
VAR_025888
P
1226
S
CFAH_HUMAN
Disease (AHUS1)
---
C
P
1226
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SUSHI ()
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
CFAH_HUMAN
19-82
83-143
144-207
208-264
265-322
387-444
446-507
515-566
567-625
628-686
689-746
751-805
809-866
868-928
929-986
987-1045
1046-1104
1107-1165
1194-1230
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
C:1194-1230
2
ALPHA_2_MACROGLOBULIN
PS00477
Alpha-2-macroglobulin family thiolester region signature.
CO3_HUMAN
1007-1015
0
-
-
[
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]
Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2xqwa_ (A:)
1b: SCOP_d2xqwb_ (B:)
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Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Terpenoid cyclases/Protein prenyltransferases
(151)
Family
:
Complement components
(19)
Protein domain
:
Thio-ester containing domain (TED) from Complement C3, aka C3d or C3dg
(16)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d2xqwa_
A:
1b
d2xqwb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_A2M_comp_2xqwB01 (B:58-291)
1b: PFAM_A2M_comp_2xqwB02 (B:58-291)
2a: PFAM_Sushi_2xqwC01 (C:1167-1228)
2b: PFAM_Sushi_2xqwC02 (C:1167-1228)
3a: PFAM_Thiol_ester_cl_2xqwB03 (B:6-36)
3b: PFAM_Thiol_ester_cl_2xqwB04 (B:6-36)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
6_Hairpin
(120)
Family
:
A2M_comp
(16)
Homo sapiens (Human)
(13)
1a
A2M_comp-2xqwB01
B:58-291
1b
A2M_comp-2xqwB02
B:58-291
Clan
:
no clan defined [family: Sushi]
(50)
Family
:
Sushi
(50)
Homo sapiens (Human)
(42)
2a
Sushi-2xqwC01
C:1167-1228
2b
Sushi-2xqwC02
C:1167-1228
Clan
:
no clan defined [family: Thiol-ester_cl]
(12)
Family
:
Thiol-ester_cl
(12)
Homo sapiens (Human)
(9)
3a
Thiol-ester_cl-2xqwB03
B:6-36
3b
Thiol-ester_cl-2xqwB04
B:6-36
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Chain C
Asymmetric Unit 1
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Asym.Unit (123 KB)
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