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Biol. Unit 2
Info
Asym.Unit (123 KB)
Biol.Unit 1 (117 KB)
Biol.Unit 2 (51 KB)
Biol.Unit 3 (50 KB)
Biol.Unit 4 (23 KB)
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(1)
Title
:
STRUCTURE OF FACTOR H DOMAINS 19-20 IN COMPLEX WITH COMPLEMENT C3D
Authors
:
T. Kajander, M. J. Lehtinen, S. Hyvarinen, A. Bhattacharjee, E. Leung, D. E. Isenman, S. Meri, T. S. Jokiranta, A. Goldman
Date
:
07 Sep 10 (Deposition) - 02 Feb 11 (Release) - 17 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Biol. Unit 4: C (1x)
Keywords
:
Immune System, Complement Alternative Pathway, Atypical Hemolytic Uremic Syndrome, Ahus, Cfh, Fh, C3B
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Kajander, M. J. Lehtinen, S. Hyvarinen, A. Bhattacharjee, E. Leung D. E. Isenman, S. Meri, A. Goldman, T. S. Jokiranta
Dual Interaction Of Factor H With C3D And Glycosaminoglycans In Host-Nonhost Discrimination By Complement.
Proc. Natl. Acad. Sci. Usa V. 108 2897 2011
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_063655 (R49L, chain A, )
2: VAR_063216 (A101V, chain A, )
3: VAR_063217 (D122N, chain A, )
4: VAR_063218 (C165W, chain A, )
5: VAR_063219 (Q168K, chain A, )
6: VAR_022761 (D223N, chain A, )
7: VAR_019207 (G231D, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_063655
R
1042
L
CO3_HUMAN
Disease (AHUS5)
---
A
R
49
L
02
UniProt
VAR_063216
A
1094
V
CO3_HUMAN
Disease (AHUS5)
---
A
A
101
V
03
UniProt
VAR_063217
D
1115
N
CO3_HUMAN
Disease (AHUS5)
---
A
D
122
N
04
UniProt
VAR_063218
C
1158
W
CO3_HUMAN
Disease (AHUS5)
---
A
C
165
W
05
UniProt
VAR_063219
Q
1161
K
CO3_HUMAN
Disease (AHUS5)
---
A
Q
168
K
06
UniProt
VAR_022761
D
1216
N
CO3_HUMAN
Unclassified
---
A
D
223
N
07
UniProt
VAR_019207
G
1224
D
CO3_HUMAN
Polymorphism
11569534
A
G
231
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
2: ALPHA_2_MACROGLOBULIN (A:14-22)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
CFAH_HUMAN
19-82
83-143
144-207
208-264
265-322
387-444
446-507
515-566
567-625
628-686
689-746
751-805
809-866
868-928
929-986
987-1045
1046-1104
1107-1165
1194-1230
0
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2
ALPHA_2_MACROGLOBULIN
PS00477
Alpha-2-macroglobulin family thiolester region signature.
CO3_HUMAN
1007-1015
1
A:14-22
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2xqwa_ (A:)
1b: SCOP_d2xqwb_ (B:)
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Protein Domains
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Terpenoid cyclases/Protein prenyltransferases
(151)
Family
:
Complement components
(19)
Protein domain
:
Thio-ester containing domain (TED) from Complement C3, aka C3d or C3dg
(16)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d2xqwa_
A:
1b
d2xqwb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_A2M_comp_2xqwB01 (B:58-291)
1b: PFAM_A2M_comp_2xqwB02 (B:58-291)
2a: PFAM_Sushi_2xqwC01 (C:1167-1228)
2b: PFAM_Sushi_2xqwC02 (C:1167-1228)
3a: PFAM_Thiol_ester_cl_2xqwB03 (B:6-36)
3b: PFAM_Thiol_ester_cl_2xqwB04 (B:6-36)
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Clans
(
)
(
)
Families
(
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(
)
Organisms
(
)
(
)
Clan
:
6_Hairpin
(120)
Family
:
A2M_comp
(16)
Homo sapiens (Human)
(13)
1a
A2M_comp-2xqwB01
B:58-291
1b
A2M_comp-2xqwB02
B:58-291
Clan
:
no clan defined [family: Sushi]
(50)
Family
:
Sushi
(50)
Homo sapiens (Human)
(42)
2a
Sushi-2xqwC01
C:1167-1228
2b
Sushi-2xqwC02
C:1167-1228
Clan
:
no clan defined [family: Thiol-ester_cl]
(12)
Family
:
Thiol-ester_cl
(12)
Homo sapiens (Human)
(9)
3a
Thiol-ester_cl-2xqwB03
B:6-36
3b
Thiol-ester_cl-2xqwB04
B:6-36
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Asymmetric Unit 1
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Asym.Unit (123 KB)
Header - Asym.Unit
Biol.Unit 1 (117 KB)
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Biol.Unit 3 (50 KB)
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