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2XQN
Asym. Unit
Info
Asym.Unit (50 KB)
Biol.Unit 1 (44 KB)
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(1)
Title
:
COMPLEX OF THE 2ND AND 3RD LIM DOMAINS OF TES WITH THE EVH1 DOMAIN OF MENA AND THE N-TERMINAL DOMAIN OF ACTIN-LIKE PROTEIN ARP7A
Authors
:
P. P. Knowles, D. C. Briggs, J. Murray-Rust, N. Q. Mcdonald
Date
:
03 Sep 10 (Deposition) - 26 Jan 11 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.62
Chains
:
Asym. Unit : A,M,T
Biol. Unit 1: A,M,T (1x)
Keywords
:
Metal-Binding Protein, Cytoskeleton, Focal Adhesion, Acrosome, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Boeda, P. P. Knowles, D. C. Briggs, J. Murray-Rust, E. Soriano, B. K. Garvalov, N. Q. Mcdonald, M. Way
Molecular Recognition Of The Tes Lim2-3 Domains By The Actin-Related Protein Arp7A.
J. Biol. Chem. V. 286 11543 2011
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
5
Ligand/Ion
ZINC ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS T:301 , CYS T:304 , HIS T:322 , HIS T:325
BINDING SITE FOR RESIDUE ZN T 1422
2
AC2
SOFTWARE
CYS T:328 , CYS T:331 , CYS T:349 , CYS T:352
BINDING SITE FOR RESIDUE ZN T 1423
3
AC3
SOFTWARE
CYS T:361 , CYS T:364 , HIS T:383 , CYS T:388
BINDING SITE FOR RESIDUE ZN T 1424
4
AC4
SOFTWARE
CYS T:391 , CYS T:394 , CYS T:412 , CYS T:416
BINDING SITE FOR RESIDUE ZN T 1425
5
AC5
SOFTWARE
HIS A:46 , CYS T:393 , CYS T:416 , HOH T:2027
BINDING SITE FOR RESIDUE ZN T 1426
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_031425 (R45C, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_031425
R
45
C
ACL7A_HUMAN
Polymorphism
---
A
R
45
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 4)
Info
All PROSITE Patterns/Profiles
1: WH1 (M:1-111)
2: LIM_DOMAIN_1 (-|T:301-335)
3: LIM_DOMAIN_2 (T:299-359|-|T:362-421)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
WH1
PS50229
WH1 domain profile.
ENAH_HUMAN
1-111
1
M:1-111
2
LIM_DOMAIN_1
PS00478
LIM zinc-binding domain signature.
TES_HUMAN
236-275
301-335
1
-
T:301-335
3
LIM_DOMAIN_2
PS50023
LIM domain profile.
TES_HUMAN
299-359
234-297
362-421
2
T:299-359
-
T:362-421
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Exons
(6, 6)
Info
All Exons
Exon 1.6c (T:297-306)
Exon 1.7a (T:307-359)
Exon 1.8d (T:360-421)
Exon 2.1a (M:1-2)
Exon 2.3 (M:2-57)
Exon 2.4 (M:58-113)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.5b/1.6c
2: Boundary 1.6c/1.7a
3: Boundary 1.7a/1.8d
4: Boundary 1.8d/-
5: Boundary -/2.1a
6: Boundary 2.1a/2.3
7: Boundary 2.3/2.4
8: Boundary 2.4/2.6
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000358204
1a
ENSE00001915255
chr7:
115850547-115850788
242
TES_HUMAN
1-9
9
0
-
-
1.3
ENST00000358204
3
ENSE00001748001
chr7:
115874588-115874673
86
TES_HUMAN
10-38
29
0
-
-
1.4a
ENST00000358204
4a
ENSE00001801236
chr7:
115889074-115889326
253
TES_HUMAN
38-122
85
0
-
-
1.5b
ENST00000358204
5b
ENSE00000919364
chr7:
115890215-115890550
336
TES_HUMAN
123-234
112
0
-
-
1.6c
ENST00000358204
6c
ENSE00000919366
chr7:
115891814-115892029
216
TES_HUMAN
235-306
72
1
T:297-306
10
1.7a
ENST00000358204
7a
ENSE00000919368
chr7:
115892372-115892530
159
TES_HUMAN
307-359
53
1
T:307-359
53
1.8d
ENST00000358204
8d
ENSE00001864576
chr7:
115897348-115898837
1490
TES_HUMAN
360-421
62
1
T:360-421
62
2.1a
ENST00000366844
1a
ENSE00001418664
chr1:
225840844-225840388
457
ENAH_HUMAN
1-2
2
1
M:1-2
2
2.3
ENST00000366844
3
ENSE00001674332
chr1:
225755116-225754951
166
ENAH_HUMAN
2-57
56
1
M:2-57
56
2.4
ENST00000366844
4
ENSE00001366252
chr1:
225742785-225742608
178
ENAH_HUMAN
58-117
60
1
M:58-113
56
2.6
ENST00000366844
6
ENSE00001236446
chr1:
225718340-225718256
85
ENAH_HUMAN
117-145
29
0
-
-
2.7a
ENST00000366844
7a
ENSE00001848744
chr1:
225707267-225706900
368
ENAH_HUMAN
145-268
124
0
-
-
2.8b
ENST00000366844
8b
ENSE00001129404
chr1:
225705008-225704898
111
ENAH_HUMAN
268-305
38
0
-
-
2.9b
ENST00000366844
9b
ENSE00001129400
chr1:
225702602-225702298
305
ENAH_HUMAN
305-406
102
0
-
-
2.10
ENST00000366844
10
ENSE00001015553
chr1:
225700718-225700573
146
ENAH_HUMAN
407-455
49
0
-
-
2.11a
ENST00000366844
11a
ENSE00001015549
chr1:
225700416-225700359
58
ENAH_HUMAN
455-474
20
0
-
-
2.12
ENST00000366844
12
ENSE00001015556
chr1:
225699561-225699513
49
ENAH_HUMAN
475-491
17
0
-
-
2.14
ENST00000366844
14
ENSE00001015555
chr1:
225695719-225695653
67
ENAH_HUMAN
491-513
23
0
-
-
2.15
ENST00000366844
15
ENSE00001418158
chr1:
225692755-225692693
63
ENAH_HUMAN
513-534
22
0
-
-
2.16b
ENST00000366844
16b
ENSE00001015551
chr1:
225688772-225688694
79
ENAH_HUMAN
534-560
27
0
-
-
2.17
ENST00000366844
17
ENSE00001015550
chr1:
225686106-225686049
58
ENAH_HUMAN
561-580
20
0
-
-
2.18f
ENST00000366844
18f
ENSE00001442743
chr1:
225685514-225680538
4977
ENAH_HUMAN
580-591
12
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2xqnm_ (M:)
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(
)
(
)
Folds
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(
)
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)
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Enabled/VASP homology 1 domain (EVH1 domain)
(14)
Protein domain
:
Enabled
(3)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2xqnm_
M:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_WH1_2xqnM01 (M:1-108)
2a: PFAM_LIM_2xqnT01 (T:361-420)
2b: PFAM_LIM_2xqnT02 (T:361-420)
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Clans
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(
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
PH
(111)
Family
:
WH1
(6)
Homo sapiens (Human)
(3)
1a
WH1-2xqnM01
M:1-108
Clan
:
no clan defined [family: LIM]
(23)
Family
:
LIM
(23)
Homo sapiens (Human)
(18)
2a
LIM-2xqnT01
T:361-420
2b
LIM-2xqnT02
T:361-420
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Asymmetric Unit 1
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