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2XQB
Asym. Unit
Info
Asym.Unit (175 KB)
Biol.Unit 1 (169 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ANTI-IL-15 ANTIBODY IN COMPLEX WITH HUMAN IL-15
Authors
:
D. C. Lowe, S. Gerhardt, A. Ward, D. Hargreaves, M. Anderson, S. Stgalla K. Vousden, F. Ferraro, R. A. Pauptit, D. Cochrane, D. V. Pattison, C. B B. Popovic, D. K. Finch, T. Wilkinson, M. Sleeman, T. J. Vaughan, S. Cru P. R. Mallinder
Date
:
01 Sep 10 (Deposition) - 29 Dec 10 (Release) - 06 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,H,L
Biol. Unit 1: A,H,L (1x)
Keywords
:
Immune System, Affinity Maturation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. C. Lowe, S. Gerhardt, A. Ward, D. Hargreaves, M. Anderson, F. Ferraro, R. A. Pauptit, D. V. Pattison, C. Buchanan, B. Popovic, D. K. Finch, T. Wilkinson, M. Sleeman, T. J. Vaughan, P. R. Mallinder
Engineering A High Affinity Anti-Il-15 Antibody: Crystal Structure Reveals An Alpha-Helix In Vh Cdr3 As Key Component Of Paratope.
J. Mol. Biol. V. 406 160 2011
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER H:25 , ASN H:54 , GLY H:55 , THR H:71 , HOH H:2044 , HOH H:2045
BINDING SITE FOR RESIDUE SO4 H1216
2
AC2
SOFTWARE
LYS A:41 , TRP H:99 , PRO H:100 , LEU H:100A , HOH H:2046
BINDING SITE FOR RESIDUE SO4 H1217
3
AC3
SOFTWARE
ARG L:52 , ARG L:54 , SER L:63
BINDING SITE FOR RESIDUE SO4 L1210
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(4, 4)
Info
All Exons
Exon 1.8b (A:1-17)
Exon 1.9 (A:21-32)
Exon 1.10 (A:33-75)
Exon 1.11c (A:81-113)
View:
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All Exon Boundaries
1: Boundary 1.6a/1.8b
2: Boundary 1.8b/1.9
3: Boundary 1.9/1.10
4: Boundary 1.10/1.11c
5: Boundary 1.11c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000320650
1a
ENSE00001517654
chr4:
142557752-142557901
150
IL15_HUMAN
-
0
0
-
-
1.2
ENST00000320650
2
ENSE00001191128
chr4:
142577339-142577460
122
IL15_HUMAN
-
0
0
-
-
1.5c
ENST00000320650
5c
ENSE00001342283
chr4:
142640519-142640629
111
IL15_HUMAN
1-4
4
0
-
-
1.6a
ENST00000320650
6a
ENSE00001081769
chr4:
142641622-142641719
98
IL15_HUMAN
5-37
33
0
-
-
1.8b
ENST00000320650
8b
ENSE00001081768
chr4:
142643077-142643161
85
IL15_HUMAN
37-65
29
1
A:1-17
17
1.9
ENST00000320650
9
ENSE00001081766
chr4:
142649093-142649137
45
IL15_HUMAN
66-80
15
1
A:21-32
12
1.10
ENST00000320650
10
ENSE00001081765
chr4:
142651000-142651137
138
IL15_HUMAN
81-126
46
1
A:33-75
43
1.11c
ENST00000320650
11c
ENSE00001911998
chr4:
142653891-142654588
698
IL15_HUMAN
127-162
36
1
A:81-113
33
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SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2xqba_ (A:)
2a: SCOP_d2xqbl1 (L:5-107)
3a: SCOP_d2xqbl2 (L:108-209)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
4-helical cytokines
(168)
Superfamily
:
4-helical cytokines
(168)
Family
:
Short-chain cytokines
(78)
Protein domain
:
automated matches
(16)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d2xqba_
A:
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
2a
d2xqbl1
L:5-107
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
3a
d2xqbl2
L:108-209
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_IL15_2xqbA01 (A:1-112)
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Clan
:
no clan defined [family: IL15]
(5)
Family
:
IL15
(5)
Homo sapiens (Human)
(4)
1a
IL15-2xqbA01
A:1-112
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Asymmetric Unit 1
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