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2XQ1
Biol. Unit 2
Info
Asym.Unit (1.3 MB)
Biol.Unit 1 (333 KB)
Biol.Unit 2 (332 KB)
Biol.Unit 3 (333 KB)
Biol.Unit 4 (332 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PEROXISOMAL CATALASE FROM THE YEAST HANSENULA POLYMORPHA
Authors
:
E. Penya-Soler, M. C. Vega, M. Wilmanns, C. P. Williams
Date
:
31 Aug 10 (Deposition) - 22 Jun 11 (Release) - 28 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: M,N,O,P (1x)
Biol. Unit 2: A,B,C,D (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: E,F,G,H (1x)
Keywords
:
Oxidoreductase, Hydrogen Peroxide Detoxification, Pts1
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Penya-Soler, M. C. Vega, M. Wilmanns, C. P. Williams
Structural Features Of Peroxisomal Catalase From The Yeast Hansenula Polymorpha
Acta Crystallogr. , Sect. D V. 67 690 2011
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
1e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
1f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
1g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
1h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
1i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
1j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
1k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
1l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
1m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
1n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
1o: PROTOPORPHYRIN IX CONTAINING FE (HEMo)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
3
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG B:62 , VAL B:63 , VAL B:64 , HIS B:65 , ARG B:102 , GLY B:121 , PHE B:122 , TYR B:137 , ASN B:138 , PRO B:148 , PHE B:151 , HIS B:208 , PHE B:324 , VAL B:340 , SER B:343 , ARG B:344 , SER B:347 , TYR B:348 , THR B:351 , HIS B:352 , ARG B:355
BINDING SITE FOR RESIDUE HEM B1503
2
AC2
SOFTWARE
ASP B:55 , ARG C:62 , VAL C:63 , VAL C:64 , HIS C:65 , ARG C:102 , GLY C:121 , VAL C:136 , TYR C:137 , ASN C:138 , PRO C:148 , PHE C:151 , PHE C:324 , VAL C:340 , SER C:343 , ARG C:344 , SER C:347 , TYR C:348 , THR C:351 , HIS C:352 , ARG C:355 , HOH C:2004
BINDING SITE FOR RESIDUE HEM C1503
3
AC3
SOFTWARE
ARG D:62 , VAL D:63 , VAL D:64 , HIS D:65 , ARG D:102 , GLY D:121 , PHE D:122 , VAL D:136 , TYR D:137 , ASN D:138 , PHE D:143 , PRO D:148 , PHE D:151 , PHE D:324 , VAL D:340 , SER D:343 , ARG D:344 , SER D:347 , TYR D:348 , THR D:351 , HIS D:352 , ARG D:355 , HOH D:2005
BINDING SITE FOR RESIDUE HEM D1503
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: CATALASE_3 (A:4-500,B:4-500,C:4-500,D:4-500)
2: CATALASE_2 (A:54-70,B:54-70,C:54-70,D:54-70)
3: CATALASE_1 (A:344-352,B:344-352,C:344-352,D:34...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CATALASE_3
PS51402
catalase family profile.
CATA_PICAN
4-500
4
A:4-500
B:4-500
C:4-500
D:4-500
-
-
-
-
-
-
-
-
-
2
CATALASE_2
PS00438
Catalase proximal active site signature.
CATA_PICAN
54-70
4
A:54-70
B:54-70
C:54-70
D:54-70
-
-
-
-
-
-
-
-
-
-
-
-
3
CATALASE_1
PS00437
Catalase proximal heme-ligand signature.
CATA_PICAN
344-352
4
A:344-352
B:344-352
C:344-352
D:344-352
-
-
-
-
-
-
-
-
-
-
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d2xq1a_ (A:)
1b: SCOP_d2xq1b_ (B:)
1c: SCOP_d2xq1k_ (K:)
1d: SCOP_d2xq1l_ (L:)
1e: SCOP_d2xq1m_ (M:)
1f: SCOP_d2xq1n_ (N:)
1g: SCOP_d2xq1o_ (O:)
1h: SCOP_d2xq1p_ (P:)
1i: SCOP_d2xq1c_ (C:)
1j: SCOP_d2xq1d_ (D:)
1k: SCOP_d2xq1e_ (E:)
1l: SCOP_d2xq1f_ (F:)
1m: SCOP_d2xq1g_ (G:)
1n: SCOP_d2xq1h_ (H:)
1o: SCOP_d2xq1i_ (I:)
1p: SCOP_d2xq1j_ (J:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Heme-dependent catalase-like
(82)
Superfamily
:
Heme-dependent catalase-like
(82)
Family
:
Heme-dependent catalases
(80)
Protein domain
:
automated matches
(32)
Pichia angusta [TaxId: 4905]
(1)
1a
d2xq1a_
A:
1b
d2xq1b_
B:
1c
d2xq1k_
K:
1d
d2xq1l_
L:
1e
d2xq1m_
M:
1f
d2xq1n_
N:
1g
d2xq1o_
O:
1h
d2xq1p_
P:
1i
d2xq1c_
C:
1j
d2xq1d_
D:
1k
d2xq1e_
E:
1l
d2xq1f_
F:
1m
d2xq1g_
G:
1n
d2xq1h_
H:
1o
d2xq1i_
I:
1p
d2xq1j_
J:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(2, 32)
Info
all PFAM domains
1a: PFAM_Catalase_rel_2xq1P01 (P:427-495)
1b: PFAM_Catalase_rel_2xq1P02 (P:427-495)
1c: PFAM_Catalase_rel_2xq1P03 (P:427-495)
1d: PFAM_Catalase_rel_2xq1P04 (P:427-495)
1e: PFAM_Catalase_rel_2xq1P05 (P:427-495)
1f: PFAM_Catalase_rel_2xq1P06 (P:427-495)
1g: PFAM_Catalase_rel_2xq1P07 (P:427-495)
1h: PFAM_Catalase_rel_2xq1P08 (P:427-495)
1i: PFAM_Catalase_rel_2xq1P09 (P:427-495)
1j: PFAM_Catalase_rel_2xq1P10 (P:427-495)
1k: PFAM_Catalase_rel_2xq1P11 (P:427-495)
1l: PFAM_Catalase_rel_2xq1P12 (P:427-495)
1m: PFAM_Catalase_rel_2xq1P13 (P:427-495)
1n: PFAM_Catalase_rel_2xq1P14 (P:427-495)
1o: PFAM_Catalase_rel_2xq1P15 (P:427-495)
1p: PFAM_Catalase_rel_2xq1P16 (P:427-495)
2a: PFAM_Catalase_2xq1P17 (P:8-404)
2b: PFAM_Catalase_2xq1P18 (P:8-404)
2c: PFAM_Catalase_2xq1P19 (P:8-404)
2d: PFAM_Catalase_2xq1P20 (P:8-404)
2e: PFAM_Catalase_2xq1P21 (P:8-404)
2f: PFAM_Catalase_2xq1P22 (P:8-404)
2g: PFAM_Catalase_2xq1P23 (P:8-404)
2h: PFAM_Catalase_2xq1P24 (P:8-404)
2i: PFAM_Catalase_2xq1P25 (P:8-404)
2j: PFAM_Catalase_2xq1P26 (P:8-404)
2k: PFAM_Catalase_2xq1P27 (P:8-404)
2l: PFAM_Catalase_2xq1P28 (P:8-404)
2m: PFAM_Catalase_2xq1P29 (P:8-404)
2n: PFAM_Catalase_2xq1P30 (P:8-404)
2o: PFAM_Catalase_2xq1P31 (P:8-404)
2p: PFAM_Catalase_2xq1P32 (P:8-404)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Catalase-rel]
(18)
Family
:
Catalase-rel
(18)
Pichia angusta (Yeast) (Hansenula polymorpha)
(1)
1a
Catalase-rel-2xq1P01
P:427-495
1b
Catalase-rel-2xq1P02
P:427-495
1c
Catalase-rel-2xq1P03
P:427-495
1d
Catalase-rel-2xq1P04
P:427-495
1e
Catalase-rel-2xq1P05
P:427-495
1f
Catalase-rel-2xq1P06
P:427-495
1g
Catalase-rel-2xq1P07
P:427-495
1h
Catalase-rel-2xq1P08
P:427-495
1i
Catalase-rel-2xq1P09
P:427-495
1j
Catalase-rel-2xq1P10
P:427-495
1k
Catalase-rel-2xq1P11
P:427-495
1l
Catalase-rel-2xq1P12
P:427-495
1m
Catalase-rel-2xq1P13
P:427-495
1n
Catalase-rel-2xq1P14
P:427-495
1o
Catalase-rel-2xq1P15
P:427-495
1p
Catalase-rel-2xq1P16
P:427-495
Clan
:
no clan defined [family: Catalase]
(19)
Family
:
Catalase
(19)
Pichia angusta (Yeast) (Hansenula polymorpha)
(1)
2a
Catalase-2xq1P17
P:8-404
2b
Catalase-2xq1P18
P:8-404
2c
Catalase-2xq1P19
P:8-404
2d
Catalase-2xq1P20
P:8-404
2e
Catalase-2xq1P21
P:8-404
2f
Catalase-2xq1P22
P:8-404
2g
Catalase-2xq1P23
P:8-404
2h
Catalase-2xq1P24
P:8-404
2i
Catalase-2xq1P25
P:8-404
2j
Catalase-2xq1P26
P:8-404
2k
Catalase-2xq1P27
P:8-404
2l
Catalase-2xq1P28
P:8-404
2m
Catalase-2xq1P29
P:8-404
2n
Catalase-2xq1P30
P:8-404
2o
Catalase-2xq1P31
P:8-404
2p
Catalase-2xq1P32
P:8-404
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Asym.Unit (1.3 MB)
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