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2XQ1
Asym. Unit
Info
Asym.Unit (1.3 MB)
Biol.Unit 1 (333 KB)
Biol.Unit 2 (332 KB)
Biol.Unit 3 (333 KB)
Biol.Unit 4 (332 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PEROXISOMAL CATALASE FROM THE YEAST HANSENULA POLYMORPHA
Authors
:
E. Penya-Soler, M. C. Vega, M. Wilmanns, C. P. Williams
Date
:
31 Aug 10 (Deposition) - 22 Jun 11 (Release) - 28 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: M,N,O,P (1x)
Biol. Unit 2: A,B,C,D (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: E,F,G,H (1x)
Keywords
:
Oxidoreductase, Hydrogen Peroxide Detoxification, Pts1
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Penya-Soler, M. C. Vega, M. Wilmanns, C. P. Williams
Structural Features Of Peroxisomal Catalase From The Yeast Hansenula Polymorpha
Acta Crystallogr. , Sect. D V. 67 690 2011
[
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Hetero Components
(1, 15)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
1e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
1f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
1g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
1h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
1i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
1j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
1k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
1l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
1m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
1n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
1o: PROTOPORPHYRIN IX CONTAINING FE (HEMo)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
15
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG B:62 , VAL B:63 , VAL B:64 , HIS B:65 , ARG B:102 , GLY B:121 , PHE B:122 , TYR B:137 , ASN B:138 , PRO B:148 , PHE B:151 , HIS B:208 , PHE B:324 , VAL B:340 , SER B:343 , ARG B:344 , SER B:347 , TYR B:348 , THR B:351 , HIS B:352 , ARG B:355
BINDING SITE FOR RESIDUE HEM B1503
02
AC2
SOFTWARE
ASP B:55 , ARG C:62 , VAL C:63 , VAL C:64 , HIS C:65 , ARG C:102 , GLY C:121 , VAL C:136 , TYR C:137 , ASN C:138 , PRO C:148 , PHE C:151 , PHE C:324 , VAL C:340 , SER C:343 , ARG C:344 , SER C:347 , TYR C:348 , THR C:351 , HIS C:352 , ARG C:355 , HOH C:2004
BINDING SITE FOR RESIDUE HEM C1503
03
AC3
SOFTWARE
ARG D:62 , VAL D:63 , VAL D:64 , HIS D:65 , ARG D:102 , GLY D:121 , PHE D:122 , VAL D:136 , TYR D:137 , ASN D:138 , PHE D:143 , PRO D:148 , PHE D:151 , PHE D:324 , VAL D:340 , SER D:343 , ARG D:344 , SER D:347 , TYR D:348 , THR D:351 , HIS D:352 , ARG D:355 , HOH D:2005
BINDING SITE FOR RESIDUE HEM D1503
04
AC4
SOFTWARE
ARG E:62 , VAL E:63 , VAL E:64 , HIS E:65 , ARG E:102 , GLY E:121 , VAL E:136 , TYR E:137 , ASN E:138 , PRO E:148 , PHE E:151 , PHE E:324 , VAL E:340 , SER E:343 , ARG E:344 , SER E:347 , TYR E:348 , HIS E:352 , ARG E:355 , HOH E:2001 , ASP H:55
BINDING SITE FOR RESIDUE HEM E1503
05
AC5
SOFTWARE
ARG F:62 , VAL F:63 , VAL F:64 , HIS F:65 , ARG F:102 , GLY F:121 , PHE F:122 , VAL F:136 , TYR F:137 , ASN F:138 , PRO F:148 , PHE F:151 , LEU F:289 , PHE F:324 , SER F:343 , ARG F:344 , SER F:347 , TYR F:348 , THR F:351 , HIS F:352 , ARG F:355 , HOH F:2002
BINDING SITE FOR RESIDUE HEM F1503
06
AC6
SOFTWARE
ARG G:62 , VAL G:63 , VAL G:64 , HIS G:65 , ARG G:102 , GLY G:121 , PHE G:122 , VAL G:136 , TYR G:137 , ASN G:138 , PHE G:151 , LEU G:289 , PHE G:324 , VAL G:340 , SER G:343 , ARG G:344 , SER G:347 , TYR G:348 , THR G:351 , HIS G:352 , ARG G:355 , HOH G:2002 , HOH G:2003
BINDING SITE FOR RESIDUE HEM G1503
07
AC7
SOFTWARE
ARG H:62 , VAL H:63 , VAL H:64 , HIS H:65 , ARG H:102 , GLY H:121 , PHE H:122 , VAL H:136 , TYR H:137 , ASN H:138 , PRO H:148 , PHE H:151 , HIS H:208 , LEU H:289 , PHE H:324 , VAL H:340 , SER H:343 , ARG H:344 , SER H:347 , TYR H:348 , THR H:351 , HIS H:352 , ARG H:355
BINDING SITE FOR RESIDUE HEM H1503
08
AC8
SOFTWARE
ARG I:62 , VAL I:63 , VAL I:64 , HIS I:65 , ARG I:102 , GLY I:121 , PHE I:122 , VAL I:136 , TYR I:137 , ASN I:138 , PHE I:151 , HIS I:208 , PHE I:324 , SER I:343 , ARG I:344 , SER I:347 , TYR I:348 , THR I:351 , HIS I:352 , ARG I:355 , HOH I:2004 , ASP L:55
BINDING SITE FOR RESIDUE HEM I1503
09
AC9
SOFTWARE
ARG J:62 , VAL J:63 , VAL J:64 , HIS J:65 , ARG J:102 , GLY J:121 , PHE J:122 , VAL J:136 , TYR J:137 , ASN J:138 , PRO J:148 , PHE J:151 , SER J:206 , HIS J:208 , LEU J:289 , PHE J:324 , VAL J:340 , SER J:343 , ARG J:344 , SER J:347 , TYR J:348 , THR J:351 , HIS J:352 , ARG J:355 , ASP K:55
BINDING SITE FOR RESIDUE HEM J1503
10
BC1
SOFTWARE
ASP J:55 , ARG K:62 , VAL K:63 , VAL K:64 , HIS K:65 , ARG K:102 , GLY K:121 , PHE K:122 , VAL K:136 , TYR K:137 , ASN K:138 , PRO K:148 , PHE K:151 , LEU K:289 , PHE K:324 , VAL K:340 , SER K:343 , ARG K:344 , SER K:347 , TYR K:348 , THR K:351 , HIS K:352 , ARG K:355
BINDING SITE FOR RESIDUE HEM K1503
11
BC2
SOFTWARE
ARG L:62 , VAL L:63 , VAL L:64 , HIS L:65 , ARG L:102 , GLY L:121 , PHE L:122 , VAL L:136 , TYR L:137 , ASN L:138 , PHE L:151 , LEU L:289 , PHE L:324 , SER L:343 , ARG L:344 , SER L:347 , TYR L:348 , THR L:351 , HIS L:352 , ARG L:355
BINDING SITE FOR RESIDUE HEM L1503
12
BC3
SOFTWARE
ARG M:62 , VAL M:64 , HIS M:65 , ARG M:102 , GLY M:121 , PHE M:122 , VAL M:136 , TYR M:137 , ASN M:138 , PHE M:151 , HIS M:208 , LEU M:289 , PHE M:324 , SER M:343 , ARG M:344 , SER M:347 , TYR M:348 , THR M:351 , HIS M:352 , ARG M:355 , HOH M:2001
BINDING SITE FOR RESIDUE HEM M1503
13
BC4
SOFTWARE
ARG N:62 , VAL N:63 , VAL N:64 , HIS N:65 , ARG N:102 , GLY N:121 , VAL N:136 , TYR N:137 , ASN N:138 , PHE N:151 , LEU N:289 , PHE N:324 , VAL N:340 , SER N:343 , ARG N:344 , SER N:347 , TYR N:348 , THR N:351 , HIS N:352 , ARG N:355 , ASP O:55
BINDING SITE FOR RESIDUE HEM N1503
14
BC5
SOFTWARE
ASP N:55 , ARG O:62 , VAL O:63 , VAL O:64 , HIS O:65 , ARG O:102 , GLY O:121 , VAL O:136 , TYR O:137 , ASN O:138 , PRO O:148 , PHE O:151 , HIS O:208 , LEU O:289 , PHE O:324 , VAL O:340 , SER O:343 , ARG O:344 , SER O:347 , TYR O:348 , THR O:351 , HIS O:352 , ARG O:355 , HOH O:2006
BINDING SITE FOR RESIDUE HEM O1503
15
BC6
SOFTWARE
ARG P:62 , VAL P:63 , VAL P:64 , HIS P:65 , ARG P:102 , GLY P:121 , PHE P:122 , VAL P:136 , TYR P:137 , ASN P:138 , PHE P:151 , HIS P:208 , PHE P:324 , SER P:343 , ARG P:344 , SER P:347 , TYR P:348 , THR P:351 , HIS P:352 , ARG P:355
BINDING SITE FOR RESIDUE HEM P1503
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
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PROSITE Patterns/Profiles
(3, 45)
Info
All PROSITE Patterns/Profiles
1: CATALASE_3 (A:4-500,B:4-500,C:4-500,D:4-500,F:...)
2: CATALASE_2 (A:54-70,B:54-70,C:54-70,D:54-70,E:...)
3: CATALASE_1 (A:344-352,B:344-352,C:344-352,D:34...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CATALASE_3
PS51402
catalase family profile.
CATA_PICAN
4-500
13
A:4-500
B:4-500
C:4-500
D:4-500
F:4-500
G:4-500
I:4-500
J:4-500
K:4-500
M:4-500
N:4-500
O:4-500
P:4-500
2
CATALASE_2
PS00438
Catalase proximal active site signature.
CATA_PICAN
54-70
16
A:54-70
B:54-70
C:54-70
D:54-70
E:54-70
F:54-70
G:54-70
H:54-70
I:54-70
J:54-70
K:54-70
L:54-70
M:54-70
N:54-70
O:54-70
P:54-70
3
CATALASE_1
PS00437
Catalase proximal heme-ligand signature.
CATA_PICAN
344-352
16
A:344-352
B:344-352
C:344-352
D:344-352
E:344-352
F:344-352
G:344-352
H:344-352
I:344-352
J:344-352
K:344-352
L:344-352
M:344-352
N:344-352
O:344-352
P:344-352
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d2xq1a_ (A:)
1b: SCOP_d2xq1b_ (B:)
1c: SCOP_d2xq1k_ (K:)
1d: SCOP_d2xq1l_ (L:)
1e: SCOP_d2xq1m_ (M:)
1f: SCOP_d2xq1n_ (N:)
1g: SCOP_d2xq1o_ (O:)
1h: SCOP_d2xq1p_ (P:)
1i: SCOP_d2xq1c_ (C:)
1j: SCOP_d2xq1d_ (D:)
1k: SCOP_d2xq1e_ (E:)
1l: SCOP_d2xq1f_ (F:)
1m: SCOP_d2xq1g_ (G:)
1n: SCOP_d2xq1h_ (H:)
1o: SCOP_d2xq1i_ (I:)
1p: SCOP_d2xq1j_ (J:)
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)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Heme-dependent catalase-like
(82)
Superfamily
:
Heme-dependent catalase-like
(82)
Family
:
Heme-dependent catalases
(80)
Protein domain
:
automated matches
(32)
Pichia angusta [TaxId: 4905]
(1)
1a
d2xq1a_
A:
1b
d2xq1b_
B:
1c
d2xq1k_
K:
1d
d2xq1l_
L:
1e
d2xq1m_
M:
1f
d2xq1n_
N:
1g
d2xq1o_
O:
1h
d2xq1p_
P:
1i
d2xq1c_
C:
1j
d2xq1d_
D:
1k
d2xq1e_
E:
1l
d2xq1f_
F:
1m
d2xq1g_
G:
1n
d2xq1h_
H:
1o
d2xq1i_
I:
1p
d2xq1j_
J:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(2, 32)
Info
all PFAM domains
1a: PFAM_Catalase_rel_2xq1P01 (P:427-495)
1b: PFAM_Catalase_rel_2xq1P02 (P:427-495)
1c: PFAM_Catalase_rel_2xq1P03 (P:427-495)
1d: PFAM_Catalase_rel_2xq1P04 (P:427-495)
1e: PFAM_Catalase_rel_2xq1P05 (P:427-495)
1f: PFAM_Catalase_rel_2xq1P06 (P:427-495)
1g: PFAM_Catalase_rel_2xq1P07 (P:427-495)
1h: PFAM_Catalase_rel_2xq1P08 (P:427-495)
1i: PFAM_Catalase_rel_2xq1P09 (P:427-495)
1j: PFAM_Catalase_rel_2xq1P10 (P:427-495)
1k: PFAM_Catalase_rel_2xq1P11 (P:427-495)
1l: PFAM_Catalase_rel_2xq1P12 (P:427-495)
1m: PFAM_Catalase_rel_2xq1P13 (P:427-495)
1n: PFAM_Catalase_rel_2xq1P14 (P:427-495)
1o: PFAM_Catalase_rel_2xq1P15 (P:427-495)
1p: PFAM_Catalase_rel_2xq1P16 (P:427-495)
2a: PFAM_Catalase_2xq1P17 (P:8-404)
2b: PFAM_Catalase_2xq1P18 (P:8-404)
2c: PFAM_Catalase_2xq1P19 (P:8-404)
2d: PFAM_Catalase_2xq1P20 (P:8-404)
2e: PFAM_Catalase_2xq1P21 (P:8-404)
2f: PFAM_Catalase_2xq1P22 (P:8-404)
2g: PFAM_Catalase_2xq1P23 (P:8-404)
2h: PFAM_Catalase_2xq1P24 (P:8-404)
2i: PFAM_Catalase_2xq1P25 (P:8-404)
2j: PFAM_Catalase_2xq1P26 (P:8-404)
2k: PFAM_Catalase_2xq1P27 (P:8-404)
2l: PFAM_Catalase_2xq1P28 (P:8-404)
2m: PFAM_Catalase_2xq1P29 (P:8-404)
2n: PFAM_Catalase_2xq1P30 (P:8-404)
2o: PFAM_Catalase_2xq1P31 (P:8-404)
2p: PFAM_Catalase_2xq1P32 (P:8-404)
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(
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(
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Organisms
(
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(
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Clan
:
no clan defined [family: Catalase-rel]
(18)
Family
:
Catalase-rel
(18)
Pichia angusta (Yeast) (Hansenula polymorpha)
(1)
1a
Catalase-rel-2xq1P01
P:427-495
1b
Catalase-rel-2xq1P02
P:427-495
1c
Catalase-rel-2xq1P03
P:427-495
1d
Catalase-rel-2xq1P04
P:427-495
1e
Catalase-rel-2xq1P05
P:427-495
1f
Catalase-rel-2xq1P06
P:427-495
1g
Catalase-rel-2xq1P07
P:427-495
1h
Catalase-rel-2xq1P08
P:427-495
1i
Catalase-rel-2xq1P09
P:427-495
1j
Catalase-rel-2xq1P10
P:427-495
1k
Catalase-rel-2xq1P11
P:427-495
1l
Catalase-rel-2xq1P12
P:427-495
1m
Catalase-rel-2xq1P13
P:427-495
1n
Catalase-rel-2xq1P14
P:427-495
1o
Catalase-rel-2xq1P15
P:427-495
1p
Catalase-rel-2xq1P16
P:427-495
Clan
:
no clan defined [family: Catalase]
(19)
Family
:
Catalase
(19)
Pichia angusta (Yeast) (Hansenula polymorpha)
(1)
2a
Catalase-2xq1P17
P:8-404
2b
Catalase-2xq1P18
P:8-404
2c
Catalase-2xq1P19
P:8-404
2d
Catalase-2xq1P20
P:8-404
2e
Catalase-2xq1P21
P:8-404
2f
Catalase-2xq1P22
P:8-404
2g
Catalase-2xq1P23
P:8-404
2h
Catalase-2xq1P24
P:8-404
2i
Catalase-2xq1P25
P:8-404
2j
Catalase-2xq1P26
P:8-404
2k
Catalase-2xq1P27
P:8-404
2l
Catalase-2xq1P28
P:8-404
2m
Catalase-2xq1P29
P:8-404
2n
Catalase-2xq1P30
P:8-404
2o
Catalase-2xq1P31
P:8-404
2p
Catalase-2xq1P32
P:8-404
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Asym.Unit (1.3 MB)
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Biol.Unit 1 (333 KB)
Header - Biol.Unit 1
Biol.Unit 2 (332 KB)
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Biol.Unit 3 (333 KB)
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