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2XPI
Asym. Unit
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Asym.Unit (367 KB)
Biol.Unit 1 (357 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF APC/C HETERO-TETRAMER CUT9-HCN1
Authors
:
Z. Zhang, K. A. Kulkarni, D. Barford
Date
:
26 Aug 10 (Deposition) - 30 Mar 11 (Release) - 21 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A,B,D,E (1x)
Keywords
:
Cell Cycle, Tpr, Ubiquitin Ligase, E3, Cell Division, N-Acetylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Zhang, K. A. Kulkarni, S. J. Hanrahan, A. J. Thompson, D. Barford
The Apc/C Subunit Cdc16/Cut9 Is A Contiguous Tetratricopeptide Superhelix With A Homo-Dimer Interface Similar To Cdc27
Embo J. V. 29 3733 2010
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
2a: GOLD (I) CYANIDE ION (AUCa)
2b: GOLD (I) CYANIDE ION (AUCb)
2c: GOLD (I) CYANIDE ION (AUCc)
2d: GOLD (I) CYANIDE ION (AUCd)
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No.
Name
Count
Type
Full Name
1
ACE
2
Mod. Amino Acid
ACETYL GROUP
2
AUC
4
Ligand/Ion
GOLD (I) CYANIDE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:138 , LEU A:139
BINDING SITE FOR RESIDUE AUC A1596
2
AC2
SOFTWARE
ASN A:177 , GLU A:199 , CYS A:203 , ARG A:206
BINDING SITE FOR RESIDUE AUC A1597
3
AC3
SOFTWARE
CYS D:138 , LEU D:139
BINDING SITE FOR RESIDUE AUC D1596
4
AC4
SOFTWARE
CYS D:310 , LYS D:311 , THR D:314
BINDING SITE FOR RESIDUE AUC D1597
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 14)
Info
All PROSITE Patterns/Profiles
1: TPR (A:200-233,D:200-233|A:373-406,D:37...)
2: TPR_REGION (A:200-233,D:200-233|A:305-583,D:30...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TPR
PS50005
TPR repeat profile.
CUT9_SCHPO
200-233
373-406
407-440
475-508
516-549
550-583
12
A:200-233
D:200-233
A:373-406
D:373-406
A:407-440
D:407-440
A:475-508
D:475-508
A:516-549
D:516-549
A:550-583
D:550-583
2
TPR_REGION
PS50293
TPR repeat region circular profile.
CUT9_SCHPO
200-233
305-583
4
A:200-233
D:200-233
A:305-583
D:305-583
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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Pfam Domains
(3, 8)
Info
all PFAM domains
1a: PFAM_Apc3_2xpiD01 (D:96-176)
1b: PFAM_Apc3_2xpiD02 (D:96-176)
2a: PFAM_TPR_1_2xpiD03 (D:516-549)
2b: PFAM_TPR_1_2xpiD04 (D:516-549)
2c: PFAM_TPR_1_2xpiD05 (D:516-549)
2d: PFAM_TPR_1_2xpiD06 (D:516-549)
3a: PFAM_APC_CDC26_2xpiE01 (E:2-24)
3b: PFAM_APC_CDC26_2xpiE02 (E:2-24)
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Clans
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)
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Organisms
(
)
(
)
Clan
:
TPR
(230)
Family
:
Apc3
(2)
Schizosaccharomyces pombe (strain ATCC 38366 / 972) (Fission yeast)
(1)
1a
Apc3-2xpiD01
D:96-176
1b
Apc3-2xpiD02
D:96-176
Family
:
TPR_1
(18)
Schizosaccharomyces pombe (strain ATCC 38366 / 972) (Fission yeast)
(1)
2a
TPR_1-2xpiD03
D:516-549
2b
TPR_1-2xpiD04
D:516-549
2c
TPR_1-2xpiD05
D:516-549
2d
TPR_1-2xpiD06
D:516-549
Clan
:
no clan defined [family: APC_CDC26]
(1)
Family
:
APC_CDC26
(1)
Schizosaccharomyces pombe (strain ATCC 38366 / 972) (Fission yeast)
(1)
3a
APC_CDC26-2xpiE01
E:2-24
3b
APC_CDC26-2xpiE02
E:2-24
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Asym.Unit (367 KB)
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