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2XPH
Biol. Unit 2
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Asym.Unit (89 KB)
Biol.Unit 1 (42 KB)
Biol.Unit 2 (42 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN SENP1 WITH THE BOUND COBALT
Authors
:
V. Rimsa, T. Eadsforth, R. T. Hay, W. N. Hunter
Date
:
26 Aug 10 (Deposition) - 08 Sep 10 (Release) - 11 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Cysteine Protease, Thiol Protease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Rimsa, T. Eadsforth, R. T. Hay, W. N. Hunter
The Role Of Co2+ In The Crystallization Of Human Senp1 And Comments On The Limitations Of Automated Refinement Protocols
Acta Crystallogr. , Sect. F V. 67 442 2011
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
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No.
Name
Count
Type
Full Name
1
CO
-1
Ligand/Ion
COBALT (II) ION
2
GOL
1
Ligand/Ion
GLYCEROL
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC6 (SOFTWARE)
4: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:555 , TRP B:465
BINDING SITE FOR RESIDUE GOL A1645
2
AC2
SOFTWARE
LYS A:543 , GLN B:569
BINDING SITE FOR RESIDUE GOL A1646
3
AC6
SOFTWARE
LYS B:429 , GLN B:458 , ASN B:461 , ASN B:464
BINDING SITE FOR RESIDUE GOL B1645
4
AC7
SOFTWARE
GLU A:430 , HIS A:640 , GLU B:430 , HIS B:640
BINDING SITE FOR RESIDUE CO B1646
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ULP_PROTEASE (B:450-614)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ULP_PROTEASE
PS50600
Ubiquitin-like protease family profile.
SENP1_HUMAN
450-614
1
-
B:450-614
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2xpha_ (A:)
1b: SCOP_d2xphb_ (B:)
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Protein Domains
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Adenain-like
(26)
Protein domain
:
automated matches
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d2xpha_
A:
1b
d2xphb_
B:
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_C48_2xphB01 (B:464-642)
1b: PFAM_Peptidase_C48_2xphB02 (B:464-642)
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Clan
:
Peptidase_CE
(7)
Family
:
Peptidase_C48
(7)
Homo sapiens (Human)
(5)
1a
Peptidase_C48-2xphB01
B:464-642
1b
Peptidase_C48-2xphB02
B:464-642
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Chain B
Asymmetric Unit 1
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Asym.Unit (89 KB)
Header - Asym.Unit
Biol.Unit 1 (42 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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