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2XNY
Biol. Unit 2
Info
Asym.Unit (230 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (106 KB)
Biol.Unit 3 (16 KB)
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(1)
Title
:
A FRAGMENT OF STREPTOCOCCAL M1 PROTEIN IN COMPLEX WITH HUMAN FIBRINOGEN
Authors
:
P. Macheboeuf, C. Y Fu, A. S. Zinkernagel, J. E. Johnson, V. Nizet, P. Gh
Date
:
06 Aug 10 (Deposition) - 13 Apr 11 (Release) - 20 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
7.50
Chains
:
Asym. Unit : A,B,C,D,E,F,M,N
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: M,N (1x)
Keywords
:
Cell Adhesion, Virulence Factor, Streptococcal Toxic Shock Syndrome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Macheboeuf, C. Buffalo, C. Y. Fu, A. S. Zinkernagel, J. N. Cole, J. E. Johnson, V. Nizet, V. Nizet, P. Ghosh
Streptococcal M1 Protein Constructs A Pathological Host Fibrinogen Network
Nature V. 472 64 2011
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(31, 31)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_033930 (Y114H, chain F, )
02: VAR_002399 (R141S, chain D, )
03: VAR_014170 (G165R, chain F, )
04: VAR_072723 (C165W, chain D, )
05: VAR_016908 (R166C, chain E, )
06: VAR_072620 (L172Q, chain E, )
07: VAR_013093 (P235L, chain E, )
08: VAR_002409 (R275C, chain F, )
09: VAR_002410 (R275H, chain F, )
10: VAR_072726 (T277P, chain F, )
11: VAR_002411 (G292V, chain F, )
12: VAR_072727 (D301H, chain F, )
13: VAR_002413 (N308I, chain F, )
14: VAR_002412 (N308K, chain F, )
15: VAR_015853 (G309D, chain F, )
16: VAR_002414 (M310T, chain F, )
17: VAR_072728 (N319D, chain F, )
18: VAR_002416 (Q329R, chain F, )
19: VAR_002418 (D330V, chain F, )
20: VAR_002417 (D330Y, chain F, )
21: VAR_002407 (A335T, chain E, )
22: VAR_002419 (N337K, chain F, )
23: VAR_016909 (L353R, chain E, )
24: VAR_002421 (S358C, chain F, )
25: VAR_002422 (R375G, chain F, )
26: VAR_072729 (R375W, chain F, )
27: VAR_072725 (T377K, chain E, )
28: VAR_072621 (S378P, chain F, )
29: VAR_014171 (M384V, chain F, )
30: VAR_016910 (G400D, chain E, )
31: VAR_002408 (R448K, chain E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_033930
Y
140
H
FIBG_HUMAN
Polymorphism
2066870
F
Y
114
H
02
UniProt
VAR_002399
R
160
S
FIBA_HUMAN
Unclassified
---
D
R
141
S
03
UniProt
VAR_014170
G
191
R
FIBG_HUMAN
Polymorphism
6063
F
G
165
R
04
UniProt
VAR_072723
C
184
W
FIBA_HUMAN
Disease (CAFBN)
---
D
C
165
W
05
UniProt
VAR_016908
R
196
C
FIBB_HUMAN
Disease (CAFBN)
---
E
R
166
C
06
UniProt
VAR_072620
L
202
Q
FIBB_HUMAN
Disease (CAFBN)
---
E
L
172
Q
07
UniProt
VAR_013093
P
265
L
FIBB_HUMAN
Polymorphism
6054
E
P
235
L
08
UniProt
VAR_002409
R
301
C
FIBG_HUMAN
Unclassified
---
F
R
275
C
09
UniProt
VAR_002410
R
301
H
FIBG_HUMAN
Disease (DYSFIBRIN)
---
F
R
275
H
10
UniProt
VAR_072726
T
303
P
FIBG_HUMAN
Disease (CAFBN)
---
F
T
277
P
11
UniProt
VAR_002411
G
318
V
FIBG_HUMAN
Disease (DYSFIBRIN)
---
F
G
292
V
12
UniProt
VAR_072727
D
327
H
FIBG_HUMAN
Disease (CAFBN)
---
F
D
301
H
13
UniProt
VAR_002413
N
334
I
FIBG_HUMAN
Polymorphism
121913090
F
N
308
I
14
UniProt
VAR_002412
N
334
K
FIBG_HUMAN
Unclassified
---
F
N
308
K
15
UniProt
VAR_015853
G
335
D
FIBG_HUMAN
Unclassified
---
F
G
309
D
16
UniProt
VAR_002414
M
336
T
FIBG_HUMAN
Unclassified
---
F
M
310
T
17
UniProt
VAR_072728
N
345
D
FIBG_HUMAN
Disease (CAFBN)
---
F
N
319
D
18
UniProt
VAR_002416
Q
355
R
FIBG_HUMAN
Unclassified
---
F
Q
329
R
19
UniProt
VAR_002418
D
356
V
FIBG_HUMAN
Disease (DYSFIBRIN)
---
F
D
330
V
20
UniProt
VAR_002417
D
356
Y
FIBG_HUMAN
Unclassified
---
F
D
330
Y
21
UniProt
VAR_002407
A
365
T
FIBB_HUMAN
Unclassified
---
E
A
335
T
22
UniProt
VAR_002419
N
363
K
FIBG_HUMAN
Unclassified
---
F
N
337
K
23
UniProt
VAR_016909
L
383
R
FIBB_HUMAN
Disease (CAFBN)
---
E
L
353
R
24
UniProt
VAR_002421
S
384
C
FIBG_HUMAN
Unclassified
---
F
S
358
C
25
UniProt
VAR_002422
R
401
G
FIBG_HUMAN
Unclassified
---
F
R
375
G
26
UniProt
VAR_072729
R
401
W
FIBG_HUMAN
Disease (CAFBN)
---
F
R
375
W
27
UniProt
VAR_072725
T
407
K
FIBB_HUMAN
Disease (CAFBN)
---
E
T
377
K
28
UniProt
VAR_072621
S
404
P
FIBG_HUMAN
Disease (DYSFIBRIN)
---
F
S
378
P
29
UniProt
VAR_014171
M
410
V
FIBG_HUMAN
Polymorphism
6061
F
M
384
V
30
UniProt
VAR_016910
G
430
D
FIBB_HUMAN
Disease (CAFBN)
---
E
G
400
D
31
UniProt
VAR_002408
R
478
K
FIBB_HUMAN
Polymorphism
4220
E
R
448
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: FIBRINOGEN_C_2 (F:144-390)
2: FIBRINOGEN_C_1 (F:334-346)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FIBRINOGEN_C_2
PS51406
Fibrinogen C-terminal domain profile.
FIBG_HUMAN
170-416
1
-
F:144-390
FIBB_HUMAN
232-488
1
-
E:202-458
2
FIBRINOGEN_C_1
PS00514
Fibrinogen C-terminal domain signature.
FIBG_HUMAN
360-372
1
-
F:334-346
FIBB_HUMAN
432-444
1
-
E:402-414
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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CATH Domains
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Info
all CATH domains
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Pfam Domains
(2, 10)
Info
all PFAM domains
1a: PFAM_Fibrinogen_C_2xnyE01 (E:207-457)
1b: PFAM_Fibrinogen_C_2xnyE02 (E:207-457)
1c: PFAM_Fibrinogen_C_2xnyF01 (F:149-389)
1d: PFAM_Fibrinogen_C_2xnyF02 (F:149-389)
2a: PFAM_Fib_alpha_2xnyD01 (D:134-175)
2b: PFAM_Fib_alpha_2xnyD02 (D:134-175)
2c: PFAM_Fib_alpha_2xnyE03 (E:161-205)
2d: PFAM_Fib_alpha_2xnyE04 (E:161-205)
2e: PFAM_Fib_alpha_2xnyF03 (F:105-147)
2f: PFAM_Fib_alpha_2xnyF04 (F:105-147)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Fibrinogen_C
(23)
Family
:
Fibrinogen_C
(23)
Homo sapiens (Human)
(19)
1a
Fibrinogen_C-2xnyE01
E:207-457
1b
Fibrinogen_C-2xnyE02
E:207-457
1c
Fibrinogen_C-2xnyF01
F:149-389
1d
Fibrinogen_C-2xnyF02
F:149-389
Clan
:
no clan defined [family: Fib_alpha]
(17)
Family
:
Fib_alpha
(17)
Homo sapiens (Human)
(12)
2a
Fib_alpha-2xnyD01
D:134-175
2b
Fib_alpha-2xnyD02
D:134-175
2c
Fib_alpha-2xnyE03
E:161-205
2d
Fib_alpha-2xnyE04
E:161-205
2e
Fib_alpha-2xnyF03
F:105-147
2f
Fib_alpha-2xnyF04
F:105-147
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