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2XNS
Asym. Unit
Info
Asym.Unit (263 KB)
Biol.Unit 1 (129 KB)
Biol.Unit 2 (128 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN G ALPHA I1 BOUND TO A DESIGNED HELICAL PEPTIDE DERIVED FROM THE GOLOCO MOTIF OF RGS14
Authors
:
D. Bosch, D. W. Sammond, G. L. Butterfoss, M. Machius, D. P. Siderovski,
Date
:
05 Aug 10 (Deposition) - 08 Jun 11 (Release) - 08 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.41
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: B,D (1x)
Biol. Unit 2: A,C (1x)
Keywords
:
Hydrolase-Peptide Complex, Adp-Ribosylation, Arginine Finger, Gtp- Binding, Lipoprotein, Nucleotide-Binding, Palmitate, Signaling Protein, Transducer, Protein-Protein Interface Design
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. W. Sammond, D. E. Bosch, G. L. Butterfoss, C. Purbeck, M. Machius, D. P. Siderovski, B. Kuhlman
Computational Design Of The Sequence And Structure Of A Protein-Binding Peptide.
J. Am. Chem. Soc. V. 133 4190 2011
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
3a: S,R MESO-TARTARIC ACID (SRTa)
3b: S,R MESO-TARTARIC ACID (SRTb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
SO4
2
Ligand/Ion
SULFATE ION
3
SRT
2
Ligand/Ion
S,R MESO-TARTARIC ACID
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:42 , GLU A:43 , SER A:44 , GLY A:45 , LYS A:46 , SER A:47 , THR A:48 , ASP A:150 , SER A:151 , ARG A:176 , ARG A:178 , ASN A:269 , LYS A:270 , ASP A:272 , LEU A:273 , CYS A:325 , ALA A:326 , THR A:327 , ARG C:516
BINDING SITE FOR RESIDUE GDP A1348
2
AC2
SOFTWARE
GLY B:42 , GLU B:43 , SER B:44 , GLY B:45 , LYS B:46 , SER B:47 , THR B:48 , ASP B:150 , SER B:151 , ARG B:176 , ARG B:178 , ASN B:269 , LYS B:270 , ASP B:272 , LEU B:273 , CYS B:325 , ALA B:326 , THR B:327 , ARG D:516
BINDING SITE FOR RESIDUE GDP B1348
3
AC3
SOFTWARE
GLN A:147 , ARG A:242 , SER C:510 , GLY C:511 , HIS C:513
BINDING SITE FOR RESIDUE SO4 C1535
4
AC4
SOFTWARE
GLN B:147 , ARG B:242 , SER D:510 , GLY D:511 , HIS D:513
BINDING SITE FOR RESIDUE SO4 D1535
5
AC5
SOFTWARE
GLU A:275 , THR A:295 , GLU A:297 , LYS B:271 , HIS B:322 , PHE B:323 , ASN B:331 , PHE B:334 , VAL B:335
BINDING SITE FOR RESIDUE SRT B1349
6
AC6
SOFTWARE
LYS A:271 , HIS A:322 , PHE A:323 , ASN A:331 , PHE A:334 , GLU B:275 , THR B:295 , TYR B:296 , GLU B:297
BINDING SITE FOR RESIDUE SRT A1349
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GOLOCO (C:497-519,D:497-519)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GOLOCO
PS50877
GoLoco/GPR motif profile.
RGS14_HUMAN
498-520
2
C:497-519
D:497-519
[
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Exons
(8, 16)
Info
All Exons
Exon 1.4a (A:32-40 | B:32-40)
Exon 1.8 (A:40-54 | B:40-54)
Exon 1.9b (A:54-101 | B:54-101)
Exon 1.10 (A:102-154 | B:102-154)
Exon 1.11 (A:154-197 | B:154-197)
Exon 1.12 (A:197-240 | B:197-240)
Exon 1.13 (A:241-292 | B:241-292)
Exon 1.14b (A:292-347 | B:292-347)
View:
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All Exon Boundaries
1: Boundary -/1.4a
2: Boundary 1.4a/1.8
3: Boundary 1.8/1.9b
4: Boundary 1.9b/1.10
5: Boundary 1.10/1.11
6: Boundary 1.11/1.12
7: Boundary 1.12/1.13
8: Boundary 1.13/1.14b
9: Boundary 1.14b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000351004
4a
ENSE00001371927
chr7:
79764104-79764594
491
GNAI1_HUMAN
1-40
40
2
A:32-40
B:32-40
9
9
1.8
ENST00000351004
8
ENSE00001626524
chr7:
79818267-79818309
43
GNAI1_HUMAN
40-54
15
2
A:40-54
B:40-54
15
15
1.9b
ENST00000351004
9b
ENSE00001129655
chr7:
79818406-79818547
142
GNAI1_HUMAN
54-101
48
2
A:54-101
B:54-101
48
48
1.10
ENST00000351004
10
ENSE00000877050
chr7:
79828541-79828698
158
GNAI1_HUMAN
102-154
53
2
A:102-154
B:102-154
53
53
1.11
ENST00000351004
11
ENSE00002174891
chr7:
79833020-79833148
129
GNAI1_HUMAN
154-197
44
2
A:154-197
B:154-197
44
44
1.12
ENST00000351004
12
ENSE00001369917
chr7:
79840285-79840414
130
GNAI1_HUMAN
197-240
44
2
A:197-240
B:197-240
44
44
1.13
ENST00000351004
13
ENSE00001591517
chr7:
79842032-79842185
154
GNAI1_HUMAN
241-292
52
2
A:241-292
B:241-292
52
52
1.14b
ENST00000351004
14b
ENSE00001303419
chr7:
79846619-79848718
2100
GNAI1_HUMAN
292-354
63
2
A:292-347
B:292-347
56
56
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_G_alpha_2xnsB01 (B:32-347)
1b: PFAM_G_alpha_2xnsB02 (B:32-347)
2a: PFAM_GoLoco_2xnsD01 (D:497-519)
2b: PFAM_GoLoco_2xnsD02 (D:497-519)
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Clans
(
)
(
)
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(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
G-alpha
(24)
Homo sapiens (Human)
(6)
1a
G-alpha-2xnsB01
B:32-347
1b
G-alpha-2xnsB02
B:32-347
Clan
:
no clan defined [family: GoLoco]
(3)
Family
:
GoLoco
(3)
Homo sapiens (Human)
(3)
2a
GoLoco-2xnsD01
D:497-519
2b
GoLoco-2xnsD02
D:497-519
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Asymmetric Unit 1
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Asym.Unit (263 KB)
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