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2XNJ
Biol. Unit 1
Info
Asym.Unit (190 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (93 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN ENGINEERED FERREDOXIN(FLAVODOXIN) NADP(H) REDUCTASE (FPR) FROM ESCHERICHIA COLI
Authors
:
H. Botti, M. A. Musumeci, E. A. Ceccarelli, A. Buschiazzo
Date
:
03 Aug 10 (Deposition) - 23 Feb 11 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Musumeci, H. Botti, A. Buschiazzo, E. A. Ceccarelli
Swapping Fad Binding Motifs Between Plastidic And Bacterial Ferredoxin-Nadp(H) Reductases.
Biochemistry V. 50 2111 2011
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
4a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
4b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
3a: SODIUM ION (NAa)
5a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
5b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
6e: ZINC ION (ZNe)
6f: ZINC ION (ZNf)
6g: ZINC ION (ZNg)
6h: ZINC ION (ZNh)
6i: ZINC ION (ZNi)
6j: ZINC ION (ZNj)
6k: ZINC ION (ZNk)
6l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
GOL
1
Ligand/Ion
GLYCEROL
3
NA
-1
Ligand/Ion
SODIUM ION
4
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
5
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
6
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC7 (SOFTWARE)
12: BC8 (SOFTWARE)
13: CC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:36 , ARG A:50 , ALA A:51 , TYR A:52 , SER A:53 , TYR A:66 , LEU A:67 , VAL A:68 , VAL A:70 , TYR A:72 , GLY A:82 , LYS A:83 , LEU A:84 , SER A:85 , THR A:125 , HIS A:255 , TYR A:256 , NAP A:1258 , HOH A:2048 , HOH A:2102 , HOH A:2187 , HOH A:2188 , HOH A:2190 , HOH A:2191 , HOH A:2192
BINDING SITE FOR RESIDUE FAD A 1257
02
AC2
SOFTWARE
ASP A:17 , ALA A:18 , VAL A:68 , THR A:69 , VAL A:70 , VAL A:71 , THR A:123 , ALA A:152 , ARG A:153 , SER A:182 , ARG A:183 , ARG A:193 , PRO A:195 , ASN A:223 , GLN A:225 , MET A:226 , ASP A:229 , FAD A:1257 , TRS A:1259 , HOH A:2113 , HOH A:2193 , HOH A:2194 , HOH A:2195 , HOH A:2196 , HOH A:2197 , HOH A:2198 , HOH A:2199 , HOH A:2200 , HOH A:2201 , HOH A:2202
BINDING SITE FOR RESIDUE NAP A 1258
03
AC3
SOFTWARE
ASP A:17 , TYR A:154 , ASP A:157 , NAP A:1258 , HOH A:2118 , HOH A:2203 , HOH A:2204 , VAL B:71 , VAL B:79
BINDING SITE FOR RESIDUE TRS A 1259
04
AC4
SOFTWARE
GLU A:111 , HIS A:243
BINDING SITE FOR RESIDUE GOL A 1260
05
AC5
SOFTWARE
ASP A:75 , HOH A:2206 , HOH A:2207 , HIS B:255
BINDING SITE FOR RESIDUE ZN A 1261
06
AC6
SOFTWARE
HIS A:114 , GLU A:116 , HIS B:114 , GLU B:116
BINDING SITE FOR RESIDUE ZN A 1262
07
AC7
SOFTWARE
HIS A:25 , ASP A:62 , HOH A:2208 , ASP B:3
BINDING SITE FOR RESIDUE ZN A 1263
08
AC8
SOFTWARE
HIS A:25 , HOH A:2209 , GLU B:102
BINDING SITE FOR RESIDUE ZN A 1264
09
AC9
SOFTWARE
GLU A:102 , HIS B:25
BINDING SITE FOR RESIDUE ZN A 1265
10
BC1
SOFTWARE
ASP A:141 , ASP B:139 , ZN B:1266
BINDING SITE FOR RESIDUE ZN A 1266
11
BC7
SOFTWARE
HIS A:255 , ASP B:75 , HOH B:2195 , HOH B:2196
BINDING SITE FOR RESIDUE ZN B 1262
12
BC8
SOFTWARE
ASP A:3 , HIS B:25 , ASP B:62 , HOH B:2197
BINDING SITE FOR RESIDUE ZN B 1263
13
CC2
SOFTWARE
ASP A:139 , ZN A:1266 , ASP B:141
BINDING SITE FOR RESIDUE ZN B 1266
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FAD_FR (A:2-110)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FAD_FR
PS51384
Ferredoxin reductase-type FAD binding domain profile.
FENR_ECOLI
2-101
1
A:2-110
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2xnja1 (A:2-109)
1b: SCOP_d2xnjb1 (B:2-109)
2a: SCOP_d2xnja2 (A:110-256)
2b: SCOP_d2xnjb2 (B:110-256)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Riboflavin synthase domain-like
(130)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Escherichia coli [TaxId: 562]
(1)
1a
d2xnja1
A:2-109
1b
d2xnjb1
B:2-109
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Superfamily
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Family
:
Reductases
(68)
Protein domain
:
automated matches
(15)
Escherichia coli [TaxId: 562]
(1)
2a
d2xnja2
A:110-256
2b
d2xnjb2
B:110-256
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_FAD_binding_6_2xnjB01 (B:6-107)
1b: PFAM_FAD_binding_6_2xnjB02 (B:6-107)
2a: PFAM_NAD_binding_1_2xnjB03 (B:120-232)
2b: PFAM_NAD_binding_1_2xnjB04 (B:120-232)
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Clan
:
FAD_Lum_binding
(30)
Family
:
FAD_binding_6
(24)
Escherichia coli (strain K12)
(2)
1a
FAD_binding_6-2xnjB01
B:6-107
1b
FAD_binding_6-2xnjB02
B:6-107
Clan
:
NAD_Ferredoxin
(30)
Family
:
NAD_binding_1
(30)
Escherichia coli (strain K12)
(2)
2a
NAD_binding_1-2xnjB03
B:120-232
2b
NAD_binding_1-2xnjB04
B:120-232
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Chain A
Asymmetric Unit 1
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Asym.Unit (190 KB)
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