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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
2XN7
Asym. Unit
Info
Asym.Unit (135 KB)
Biol.Unit 1 (129 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THYROXINE-BINDING GLOBULIN COMPLEXED WITH THYROXINE-FLUORESEIN (T405-CF)
Authors
:
X. Qi, Y. Yan, Z. Wei, A. Zhou
Date
:
30 Jul 10 (Deposition) - 16 Feb 11 (Release) - 11 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.43
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transport, Cleaved Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Qi, F. Loiseau, W. L. Chan, Y. Yan, Z. Wei, L. G. Milroy, R. M. Myers, S. V. Ley, R. J. Read, R. W. Carrell, A. Zhou
Allosteric Modulation Of Hormone Release From Thyroxine And Corticosteroid Binding-Globulins.
J. Biol. Chem. V. 286 16163 2011
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
3a: 3',6'-DIHYDROXY-3-OXO-3H-SPIRO[2-B... (F6Za)
4a: 3,5,3',5'-TETRAIODO-L-THYRONINE (T44a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
F6Z
1
Ligand/Ion
3',6'-DIHYDROXY-3-OXO-3H-SPIRO[2-BENZOFURAN-1,9'-XANTHENE]-5-CARBOXYLIC ACID
4
T44
1
Ligand/Ion
3,5,3',5'-TETRAIODO-L-THYRONINE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:238 , LEU A:246 , LEU A:269 , ASN A:273 , F6Z A:1356 , LEU B:376 , ARG B:378 , ARG B:381
BINDING SITE FOR RESIDUE T44 A1355
2
AC2
SOFTWARE
LYS A:104 , GLU A:105 , TYR A:225 , GLN A:238 , ASP A:240 , LYS A:278 , T44 A:1355 , ARG B:378
BINDING SITE FOR RESIDUE F6Z A1356
3
AC3
SOFTWARE
CA A:1358
BINDING SITE FOR RESIDUE EDO A1357
4
AC4
SOFTWARE
HIS A:226 , HOH B:2019 , HOH B:2021 , HOH B:2023
BINDING SITE FOR RESIDUE EDO B1396
5
AC5
SOFTWARE
GLU A:200 , ASP A:201 , EDO A:1357
BINDING SITE FOR RESIDUE CA A1358
[
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SAPs(SNPs)/Variants
(9, 9)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_007102 (S23T, chain A, )
2: VAR_007103 (I96N, chain A, )
3: VAR_007104 (A113P, chain A, )
4: VAR_007105 (D171N, chain A, )
5: VAR_007106 (A191T, chain A, )
6: VAR_007107 (L227P, chain A, )
7: VAR_007108 (L283F, chain A, )
8: VAR_007109 (H331Y, chain A, )
9: VAR_007110 (P363L, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_007102
S
43
T
THBG_HUMAN
Disease (TBG deficiency)
---
A
S
23
T
2
UniProt
VAR_007103
I
116
N
THBG_HUMAN
Disease (TBG deficiency)
28933689
A
I
96
N
3
UniProt
VAR_007104
A
133
P
THBG_HUMAN
Disease (TBG deficiency)
28933688
A
A
113
P
4
UniProt
VAR_007105
D
191
N
THBG_HUMAN
Polymorphism
1050086
A
D
171
N
5
UniProt
VAR_007106
A
211
T
THBG_HUMAN
Polymorphism
2234036
A
A
191
T
6
UniProt
VAR_007107
L
247
P
THBG_HUMAN
Disease (TBG deficiency)
28937312
A
L
227
P
7
UniProt
VAR_007108
L
303
F
THBG_HUMAN
Polymorphism
1804495
A
L
283
F
8
UniProt
VAR_007109
H
351
Y
THBG_HUMAN
Disease (TBG deficiency)
---
A
H
331
Y
9
UniProt
VAR_007110
P
383
L
THBG_HUMAN
Disease (TBG deficiency)
---
B
P
363
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SERPIN (B:365-375)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SERPIN
PS00284
Serpins signature.
THBG_HUMAN
385-395
1
B:365-375
[
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Exons
(4, 5)
Info
All Exons
Exon 1.2b (A:17-188 | -)
Exon 1.3a (A:188-279 | -)
Exon 1.4 (A:279-328 | -)
Exon 1.5b (A:329-356 (gaps) | B:362-395)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2b
2: Boundary 1.2b/1.3a
3: Boundary 1.3a/1.4
4: Boundary 1.4/1.5b
5: Boundary 1.5b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000372563
1
ENSE00001458103
X:105282729-105282689
41
THBG_HUMAN
-
0
0
-
-
1.2b
ENST00000372563
2b
ENSE00001458102
X:105281066-105280428
639
THBG_HUMAN
1-208
208
1
A:17-188
-
172
-
1.3a
ENST00000372563
3a
ENSE00000840356
X:105279376-105279103
274
THBG_HUMAN
208-299
92
1
A:188-279
-
92
-
1.4
ENST00000372563
4
ENSE00000840355
X:105278373-105278226
148
THBG_HUMAN
299-348
50
1
A:279-328
-
50
-
1.5b
ENST00000372563
5b
ENSE00000840354
X:105277694-105277197
498
THBG_HUMAN
349-415
67
2
A:329-356 (gaps)
B:362-395
54
34
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Serpin_2xn7B01 (B:362-392)
1b: PFAM_Serpin_2xn7B02 (B:362-392)
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(
)
Clan
:
no clan defined [family: Serpin]
(63)
Family
:
Serpin
(63)
Homo sapiens (Human)
(41)
1a
Serpin-2xn7B01
B:362-392
1b
Serpin-2xn7B02
B:362-392
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Asym.Unit (135 KB)
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