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Getting 'Exon' information from database.
2XMG
Asym. Unit
Info
Asym.Unit (195 KB)
Biol.Unit 1, α-C (1.4 MB)
Biol.Unit 1 (1.4 MB)
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(1)
Title
:
G117H MUTANT OF HUMAN BUTYRYLCHOLINESTERASE IN COMPLEX WITH VX
Authors
:
F. Nachon, E. Carletti, M. Wandhammer, Y. Nicolet, L. M. Schopfer, P. Ma O. Lockridge
Date
:
27 Jul 10 (Deposition) - 01 Dec 10 (Release) - 14 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (8x)
Keywords
:
Glycoprotein, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Nachon, E. Carletti, M. Wandhammer, Y. Nicolet, L. M. Schopfer, P. Masson, O. Lockridge
X-Ray Crystallographic Snapshots Of Reaction Intermediates In The G117H Mutant Of Human Butyrylcholinesterase, A Nerve Agent Target Engineered Into A Catalytic Bioscavenge
Biochem. J. V. 434 73 2011
[
close entry info
]
Hetero Components
(7, 27)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
2a: BETA-L-FUCOSE (FULa)
2b: BETA-L-FUCOSE (FULb)
2c: BETA-L-FUCOSE (FULc)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4a: AMMONIUM ION (NH4a)
4b: AMMONIUM ION (NH4b)
5a: SULFATE ION (SO4a)
6a: UNKNOWN ATOM OR ION (UNXa)
6b: UNKNOWN ATOM OR ION (UNXb)
6c: UNKNOWN ATOM OR ION (UNXc)
6d: UNKNOWN ATOM OR ION (UNXd)
6e: UNKNOWN ATOM OR ION (UNXe)
6f: UNKNOWN ATOM OR ION (UNXf)
6g: UNKNOWN ATOM OR ION (UNXg)
7a: O-ETHYLMETHYLPHOSPHONIC ACID ESTER... (VXa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
5
Ligand/Ion
CHLORIDE ION
2
FUL
3
Ligand/Ion
BETA-L-FUCOSE
3
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
NH4
2
Ligand/Ion
AMMONIUM ION
5
SO4
1
Ligand/Ion
SULFATE ION
6
UNX
7
Ligand/Ion
UNKNOWN ATOM OR ION
7
VX
1
Ligand/Ion
O-ETHYLMETHYLPHOSPHONIC ACID ESTER GROUP
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:116 , HIS A:117 , SER A:198 , ALA A:199 , HIS A:438
BINDING SITE FOR RESIDUE VX A1530
02
AC2
SOFTWARE
GLN A:316 , GLY A:413 , ASN A:414 , ASN A:415
BINDING SITE FOR RESIDUE SO4 A1531
03
AC3
SOFTWARE
LYS A:323 , TYR A:420 , HOH A:2144
BINDING SITE FOR RESIDUE CL A1532
04
AC4
SOFTWARE
ARG A:347
BINDING SITE FOR RESIDUE CL A1533
05
AC5
SOFTWARE
ARG A:515
BINDING SITE FOR RESIDUE CL A1534
06
AC6
SOFTWARE
THR A:508
BINDING SITE FOR RESIDUE CL A1535
07
AC7
SOFTWARE
GLU A:443 , HOH A:2146 , HOH A:2147
BINDING SITE FOR RESIDUE NH4 A1543
08
AC8
SOFTWARE
ARG A:14 , ASN A:57 , HOH A:2150
BINDING SITE FOR RESIDUE NAG A1549
09
AC9
SOFTWARE
ARG A:465 , ASN A:485 , HOH A:2151
BINDING SITE FOR RESIDUE NAG A1550
10
BC1
SOFTWARE
ASN A:256 , HOH A:2061
BINDING SITE FOR RESIDUE NAG A1551
11
BC2
SOFTWARE
THR A:512
BINDING SITE FOR RESIDUE CL A1555
12
BC3
SOFTWARE
ASN A:106 , ASN A:188 , LYS A:190 , HOH A:2149
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 106 RESIDUES 1547 TO 1548
13
BC4
SOFTWARE
ASN A:241 , ASN A:245 , LEU A:249 , PHE A:278 , PRO A:281
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 241 RESIDUES 1552 TO 1554
14
BC5
SOFTWARE
GLY A:336 , SER A:338 , ASN A:341 , HOH A:2148
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 341 RESIDUES 1544 TO 1546
[
close Site info
]
SAPs(SNPs)/Variants
(42, 42)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_072094 (K12R, chain A, )
02: VAR_040012 (T24M, chain A, )
03: VAR_040013 (F28I, chain A, )
04: VAR_040014 (Y33C, chain A, )
05: VAR_072730 (A34V, chain A, )
06: VAR_040015 (P37S, chain A, )
07: VAR_002360 (D70G, chain A, )
08: VAR_040016 (D70H, chain A, )
09: VAR_072095 (G75R, chain A, )
10: VAR_072096 (E90D, chain A, )
11: VAR_040017 (N96Y, chain A, )
12: VAR_072097 (I99M, chain A, )
13: VAR_040018 (P100S, chain A, )
14: VAR_040019 (G115D, chain A, )
15: VAR_040020 (L125F, chain A, )
16: VAR_040021 (Y128C, chain A, )
17: VAR_040022 (V142M, chain A, )
18: VAR_040023 (D170E, chain A, )
19: VAR_040024 (S198G, chain A, )
20: VAR_040025 (A199V, chain A, )
21: VAR_040026 (A201T, chain A, )
22: VAR_072098 (V204D, chain A, )
23: VAR_040027 (T243M, chain A, )
24: VAR_040028 (T250P, chain A, )
25: VAR_040029 (E255D, chain A, )
26: VAR_040030 (K267R, chain A, )
27: VAR_072099 (V294M, chain A, )
28: VAR_040031 (L307P, chain A, )
29: VAR_040032 (A328D, chain A, )
30: VAR_002362 (L330I, chain A, )
31: VAR_072100 (G333C, chain A, )
32: VAR_040033 (G365R, chain A, )
33: VAR_040034 (R386C, chain A, )
34: VAR_040035 (G390V, chain A, )
35: VAR_040036 (F418S, chain A, )
36: VAR_040037 (E460K, chain A, )
37: VAR_072101 (R470W, chain A, )
38: VAR_040038 (W471R, chain A, )
39: VAR_040039 (F474L, chain A, )
40: VAR_040040 (E497V, chain A, )
41: VAR_040041 (R515C, chain A, )
42: VAR_040042 (Q518L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_072094
K
40
R
CHLE_HUMAN
Polymorphism
116047990
A
K
12
R
02
UniProt
VAR_040012
T
52
M
CHLE_HUMAN
Disease (BChE deficiency)
56309853
A
T
24
M
03
UniProt
VAR_040013
F
56
I
CHLE_HUMAN
Disease (BChE deficiency)
---
A
F
28
I
04
UniProt
VAR_040014
Y
61
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
Y
33
C
05
UniProt
VAR_072730
A
62
V
CHLE_HUMAN
Disease (BChE deficiency)
---
A
A
34
V
06
UniProt
VAR_040015
P
65
S
CHLE_HUMAN
Disease (BChE deficiency)
---
A
P
37
S
07
UniProt
VAR_002360
D
98
G
CHLE_HUMAN
Disease (BChE deficiency)
1799807
A
D
70
G
08
UniProt
VAR_040016
D
98
H
CHLE_HUMAN
Disease (BChE deficiency)
---
A
D
70
H
09
UniProt
VAR_072095
G
103
R
CHLE_HUMAN
Disease (BChE deficiency)
---
A
G
75
R
10
UniProt
VAR_072096
E
118
D
CHLE_HUMAN
Disease (BChE deficiency)
---
A
E
90
D
11
UniProt
VAR_040017
N
124
Y
CHLE_HUMAN
Disease (BChE deficiency)
---
A
N
96
Y
12
UniProt
VAR_072097
I
127
M
CHLE_HUMAN
Polymorphism
---
A
I
99
M
13
UniProt
VAR_040018
P
128
S
CHLE_HUMAN
Disease (BChE deficiency)
3732880
A
P
100
S
14
UniProt
VAR_040019
G
143
D
CHLE_HUMAN
Disease (BChE deficiency)
---
A
G
115
D
15
UniProt
VAR_040020
L
153
F
CHLE_HUMAN
Disease (BChE deficiency)
---
A
L
125
F
16
UniProt
VAR_040021
Y
156
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
Y
128
C
17
UniProt
VAR_040022
V
170
M
CHLE_HUMAN
Disease (BChE deficiency)
---
A
V
142
M
18
UniProt
VAR_040023
D
198
E
CHLE_HUMAN
Disease (BChE deficiency)
---
A
D
170
E
19
UniProt
VAR_040024
S
226
G
CHLE_HUMAN
Disease (BChE deficiency)
---
A
S
198
G
20
UniProt
VAR_040025
A
227
V
CHLE_HUMAN
Disease (BChE deficiency)
---
A
A
199
V
21
UniProt
VAR_040026
A
229
T
CHLE_HUMAN
Disease (BChE deficiency)
---
A
A
201
T
22
UniProt
VAR_072098
V
232
D
CHLE_HUMAN
Disease (BChE deficiency)
---
A
V
204
D
23
UniProt
VAR_040027
T
271
M
CHLE_HUMAN
Disease (BChE deficiency)
28933389
A
T
243
M
24
UniProt
VAR_040028
T
278
P
CHLE_HUMAN
Disease (BChE deficiency)
---
A
T
250
P
25
UniProt
VAR_040029
E
283
D
CHLE_HUMAN
Polymorphism
16849700
A
E
255
D
26
UniProt
VAR_040030
K
295
R
CHLE_HUMAN
Disease (BChE deficiency)
115624085
A
K
267
R
27
UniProt
VAR_072099
V
322
M
CHLE_HUMAN
Polymorphism
---
A
V
294
M
28
UniProt
VAR_040031
L
335
P
CHLE_HUMAN
Disease (BChE deficiency)
---
A
L
307
P
29
UniProt
VAR_040032
A
356
D
CHLE_HUMAN
Disease (BChE deficiency)
---
A
A
328
D
30
UniProt
VAR_002362
L
358
I
CHLE_HUMAN
Disease (BChE deficiency)
121918557
A
L
330
I
31
UniProt
VAR_072100
G
361
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
G
333
C
32
UniProt
VAR_040033
G
393
R
CHLE_HUMAN
Disease (BChE deficiency)
115129687
A
G
365
R
33
UniProt
VAR_040034
R
414
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
R
386
C
34
UniProt
VAR_040035
G
418
V
CHLE_HUMAN
Disease (BChE deficiency)
28933390
A
G
390
V
35
UniProt
VAR_040036
F
446
S
CHLE_HUMAN
Disease (BChE deficiency)
---
A
F
418
S
36
UniProt
VAR_040037
E
488
K
CHLE_HUMAN
Disease (BChE deficiency)
---
A
E
460
K
37
UniProt
VAR_072101
R
498
W
CHLE_HUMAN
Polymorphism
115017300
A
R
470
W
38
UniProt
VAR_040038
W
499
R
CHLE_HUMAN
Disease (BChE deficiency)
---
A
W
471
R
39
UniProt
VAR_040039
F
502
L
CHLE_HUMAN
Disease (BChE deficiency)
---
A
F
474
L
40
UniProt
VAR_040040
E
525
V
CHLE_HUMAN
Disease (BChE deficiency)
---
A
E
497
V
41
UniProt
VAR_040041
R
543
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
R
515
C
42
UniProt
VAR_040042
Q
546
L
CHLE_HUMAN
Disease (BChE deficiency)
---
A
Q
518
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: CARBOXYLESTERASE_B_2 (A:90-100)
2: CARBOXYLESTERASE_B_1 (A:185-200)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBOXYLESTERASE_B_2
PS00941
Carboxylesterases type-B signature 2.
CHLE_HUMAN
118-128
1
A:90-100
2
CARBOXYLESTERASE_B_1
PS00122
Carboxylesterases type-B serine active site.
CHLE_HUMAN
213-228
1
A:185-200
[
close PROSITE info
]
Exons
(2, 2)
Info
All Exons
Exon 1.2 (A:3-478)
Exon 1.4 (A:478-529)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.4
3: Boundary 1.4/1.7c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000264381
1a
ENSE00001954521
chr3:
165555260-165555102
159
CHLE_HUMAN
-
0
0
-
-
1.2
ENST00000264381
2
ENSE00000826111
chr3:
165548829-165547305
1525
CHLE_HUMAN
1-506
506
1
A:3-478
476
1.4
ENST00000264381
4
ENSE00000780132
chr3:
165504099-165503933
167
CHLE_HUMAN
506-562
57
1
A:478-529
52
1.7c
ENST00000264381
7c
ENSE00001810445
chr3:
165491294-165490692
603
CHLE_HUMAN
562-602
41
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2xmga_ (A:)
View:
Select:
Label:
Classes
(
)
(
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Folds
(
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(
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Superfamilies
(
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(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Acetylcholinesterase-like
(219)
Protein domain
:
automated matches
(91)
Human (Homo sapiens) [TaxId: 9606]
(35)
1a
d2xmga_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_COesterase_2xmgA01 (A:3-522)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
AB_hydrolase
(347)
Family
:
COesterase
(79)
Homo sapiens (Human)
(38)
1a
COesterase-2xmgA01
A:3-522
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
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Hetero
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Solvent
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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Asymmetric Unit 1
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