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2XM3
Asym. Unit
Info
Asym.Unit (221 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (74 KB)
Biol.Unit 3 (73 KB)
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(1)
Title
:
DEINOCOCCUS RADIODURANS ISDRA2 TRANSPOSASE LEFT END DNA COMPLEX
Authors
:
A. B. Hickman, J. A. James, O. Barabas, C. Pasternak, B. Ton-Hoang, M. Ch S. Sommer, F. Dyda
Date
:
22 Jul 10 (Deposition) - 13 Oct 10 (Release) - 12 Jan 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: C,D,K,L,M,N (1x)
Biol. Unit 2: A,B,G,H,I,J (1x)
Biol. Unit 3: E,F,O,P,Q,R (1x)
Keywords
:
Dna Binding Protein-Dna Complex, Transposition, Mobile Element
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. B. Hickman, J. A. James, O. Barabas, C. Pasternak, B. Ton-Hoang, M. Chandler, S. Sommer, F. Dyda
Dna Recognition And The Precleavage State During Single-Stranded Dna Transposition In D. Radiodurans.
Embo J. V. 29 3840 2010
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
3k: MAGNESIUM ION (MGk)
3l: MAGNESIUM ION (MGl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
GOL
4
Ligand/Ion
GLYCEROL
3
MG
12
Ligand/Ion
MAGNESIUM ION
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU B:62 , VAL B:63
BINDING SITE FOR RESIDUE ACT B1135
02
AC2
SOFTWARE
PRO E:114 , HOH E:2034 , DC O:31 , HOH O:2017 , HOH O:2019 , HOH O:2020
BINDING SITE FOR RESIDUE MG E1135
03
AC3
SOFTWARE
PRO F:114 , HOH F:2023 , DC Q:31 , HOH Q:2018 , HOH Q:2019 , HOH Q:2020
BINDING SITE FOR RESIDUE MG F1135
04
AC4
SOFTWARE
CYS A:27 , CYS A:117 , HOH A:2013 , DC G:15 , DA G:16 , HOH G:2035 , DT H:5
BINDING SITE FOR RESIDUE GOL G1038
05
AC5
SOFTWARE
PRO A:114 , HOH B:2003 , DC G:31 , HOH G:2024 , HOH G:2026 , HOH G:2028
BINDING SITE FOR RESIDUE MG G1039
06
AC6
SOFTWARE
HOH G:2012 , HOH G:2013 , HOH G:2030 , HOH G:2032 , HOH G:2033 , HOH G:2034
BINDING SITE FOR RESIDUE MG G1114
07
AC7
SOFTWARE
PRO B:114 , HOH B:2045 , DC I:31 , HOH I:2026 , HOH I:2029 , HOH I:2031
BINDING SITE FOR RESIDUE MG I1038
08
AC8
SOFTWARE
HOH I:2010 , HOH I:2013 , HOH I:2035 , HOH I:2037 , HOH I:2038 , HOH I:2040
BINDING SITE FOR RESIDUE MG I1116
09
AC9
SOFTWARE
CYS B:27 , CYS B:117 , DC I:15 , DA I:16 , DT J:5 , HOH J:2007 , HOH J:2008
BINDING SITE FOR RESIDUE GOL J1006
10
BC1
SOFTWARE
PRO C:114 , HOH C:2049 , DC K:31 , HOH K:2030 , HOH K:2033 , HOH K:2035
BINDING SITE FOR RESIDUE MG K1038
11
BC2
SOFTWARE
HOH K:2003 , HOH K:2004 , HOH K:2039 , HOH K:2040 , HOH K:2043 , HOH K:2045
BINDING SITE FOR RESIDUE MG K1039
12
BC3
SOFTWARE
CYS C:27 , CYS C:117 , HOH C:2005 , DC K:15 , DA K:16 , DT L:5 , HOH L:2004
BINDING SITE FOR RESIDUE GOL L1006
13
BC4
SOFTWARE
PRO D:114 , HOH D:2040 , DC M:31 , HOH M:2018 , HOH M:2019 , HOH M:2023
BINDING SITE FOR RESIDUE MG M1038
14
BC5
SOFTWARE
HOH M:2008 , HOH M:2010 , HOH M:2026 , HOH M:2027 , HOH M:2028 , HOH M:2029
BINDING SITE FOR RESIDUE MG M1121
15
BC6
SOFTWARE
HOH O:2003 , HOH O:2009 , HOH O:2010 , HOH O:2021 , HOH O:2022 , HOH O:2023
BINDING SITE FOR RESIDUE MG O1112
16
BC7
SOFTWARE
CYS E:27 , CYS E:117 , HOH E:2011 , TYR F:132 , DC O:15 , DA O:16 , DT P:5
BINDING SITE FOR RESIDUE GOL P1007
17
BC8
SOFTWARE
HOH Q:2003 , HOH Q:2004 , HOH Q:2015 , HOH Q:2021 , HOH Q:2023 , HOH Q:2024
BINDING SITE FOR RESIDUE MG Q1111
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain D
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Chain F
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Chain J
Chain K
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (221 KB)
Header - Asym.Unit
Biol.Unit 1 (75 KB)
Header - Biol.Unit 1
Biol.Unit 2 (74 KB)
Header - Biol.Unit 2
Biol.Unit 3 (73 KB)
Header - Biol.Unit 3
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