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2XLU
Biol. Unit 1
Info
Asym.Unit (321 KB)
Biol.Unit 1 (158 KB)
Biol.Unit 2 (159 KB)
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(1)
Title
:
JOINT-FUNCTIONS OF PROTEIN RESIDUES AND NADP(H) IN OXYGEN-ACTIVATION BY FLAVIN-CONTAINING MONOOXYGENASE: COMPLEX WITH THIONADP
Authors
:
R. Orru, M. W. Fraaije, A. Mattevi
Date
:
21 Jul 10 (Deposition) - 15 Sep 10 (Release) - 10 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: B,C (1x)
Biol. Unit 2: A,D (1x)
Keywords
:
Oxidoreductase, Trimethyaminuria
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
R. Orru, M. W. Fraaije, A. Mattevi
Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase
J. Biol. Chem. V. 285 35021 2010
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
1b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
2d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
3a: [(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN... (NA7a)
3b: [(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN... (NA7b)
3c: [(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN... (NA7c)
3d: [(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN... (NA7d)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
4d: DI(HYDROXYETHYL)ETHER (PEGd)
4e: DI(HYDROXYETHYL)ETHER (PEGe)
4f: DI(HYDROXYETHYL)ETHER (PEGf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EPE
-1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
NA7
2
Ligand/Ion
[(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXY-4-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4S)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGENDIPHOSPHATE
4
PEG
3
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(9, 9)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
5: AC9 (SOFTWARE)
6: BC1 (SOFTWARE)
7: BC2 (SOFTWARE)
8: BC3 (SOFTWARE)
9: BC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
GLY B:14 , GLY B:16 , PRO B:17 , SER B:18 , GLU B:43 , LYS B:44 , GLN B:45 , GLY B:50 , GLN B:51 , TRP B:52 , HIS B:68 , SER B:70 , MET B:71 , SER B:77 , ASN B:78 , LEU B:84 , THR B:129 , ALA B:130 , VAL B:131 , CYS B:166 , THR B:167 , GLY B:168 , PHE B:170 , GLN B:323 , SER B:326 , NA7 B:501 , HOH B:2002 , HOH B:2015 , HOH B:2119 , HOH B:2120 , HOH B:2121
BINDING SITE FOR RESIDUE FAD B 500
2
AC4
SOFTWARE
TYR B:174 , PRO B:176 , SER B:210 , SER B:211 , TYR B:212 , SER B:213 , ARG B:234 , THR B:235 , ASN B:251 , CYS B:276 , THR B:277 , GLY B:278 , TYR B:279 , FAD B:500 , HOH B:2069
BINDING SITE FOR RESIDUE NA7 B 501
3
AC5
SOFTWARE
GLY C:14 , GLY C:16 , PRO C:17 , SER C:18 , GLU C:43 , LYS C:44 , GLN C:45 , GLY C:50 , GLN C:51 , TRP C:52 , HIS C:68 , SER C:70 , MET C:71 , LEU C:75 , SER C:77 , ASN C:78 , LEU C:84 , THR C:129 , ALA C:130 , VAL C:131 , CYS C:166 , THR C:167 , PHE C:170 , GLN C:323 , SER C:326 , PHE C:327 , NA7 C:501 , HOH C:2001 , HOH C:2005 , HOH C:2068 , HOH C:2083 , HOH C:2084
BINDING SITE FOR RESIDUE FAD C 500
4
AC6
SOFTWARE
PHE C:170 , TYR C:174 , PRO C:176 , PHE C:178 , VAL C:208 , SER C:210 , SER C:211 , TYR C:212 , SER C:213 , ARG C:234 , THR C:235 , ASN C:251 , CYS C:276 , THR C:277 , GLY C:278 , TYR C:279 , ASP C:322 , FAD C:500 , HOH C:2085 , HOH C:2086
BINDING SITE FOR RESIDUE NA7 C 501
5
AC9
SOFTWARE
ARG A:24 , GLN A:27 , LYS A:118 , ASN C:295
BINDING SITE FOR RESIDUE EPE A1452
6
BC1
SOFTWARE
ALA B:87 , MET B:425
BINDING SITE FOR RESIDUE PEG B1451
7
BC2
SOFTWARE
ARG B:24 , GLN B:27
BINDING SITE FOR RESIDUE PEG B1452
8
BC3
SOFTWARE
ASN B:295 , ARG D:24 , GLN D:27 , GLU D:31
BINDING SITE FOR RESIDUE EPE D1452
9
BC5
SOFTWARE
TRP B:360
BINDING SITE FOR RESIDUE PEG B1453
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_FMO_like_2xluD01 (D:247-398)
1b: PFAM_FMO_like_2xluD02 (D:247-398)
1c: PFAM_FMO_like_2xluD03 (D:247-398)
1d: PFAM_FMO_like_2xluD04 (D:247-398)
1e: PFAM_FMO_like_2xluD05 (D:247-398)
1f: PFAM_FMO_like_2xluD06 (D:247-398)
1g: PFAM_FMO_like_2xluD07 (D:247-398)
1h: PFAM_FMO_like_2xluD08 (D:247-398)
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Clan
:
NADP_Rossmann
(1239)
Family
:
FMO-like
(13)
Methylophaga aminisulfidivorans
(12)
1a
FMO-like-2xluD01
D:247-398
1b
FMO-like-2xluD02
D:247-398
1c
FMO-like-2xluD03
D:247-398
1d
FMO-like-2xluD04
D:247-398
1e
FMO-like-2xluD05
D:247-398
1f
FMO-like-2xluD06
D:247-398
1g
FMO-like-2xluD07
D:247-398
1h
FMO-like-2xluD08
D:247-398
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (321 KB)
Header - Asym.Unit
Biol.Unit 1 (158 KB)
Header - Biol.Unit 1
Biol.Unit 2 (159 KB)
Header - Biol.Unit 2
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