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2XKW
Biol. Unit 2
Info
Asym.Unit (192 KB)
Biol.Unit 1 (93 KB)
Biol.Unit 2 (91 KB)
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(1)
Title
:
LIGAND BINDING DOMAIN OF HUMAN PPAR-GAMMA IN COMPLEX WITH THE AGONIST PIOGLITAZONE
Authors
:
J. J. Mueller, M. Schupp, T. Unger, U. Kintscher, U. Heinemann
Date
:
14 Jul 10 (Deposition) - 10 Aug 11 (Release) - 10 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.02
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transcription, Nuclear Receptor, Transcription Factor, Gene Regulation, Thiazolidinedione
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. J. Mueller, M. Schupp, T. Unger, U. Kintscher, U. Heinemann
Binding Diversity Of Pioglitazone By Peroxisome Proliferator-Activated Receptor-Gamma
To Be Published
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEa)
2a: (5R)-5-{4-[2-(5-ETHYLPYRIDIN-2-YL)... (P1Ba)
2b: (5R)-5-{4-[2-(5-ETHYLPYRIDIN-2-YL)... (P1Bb)
3a: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID
2
P1B
1
Ligand/Ion
(5R)-5-{4-[2-(5-ETHYLPYRIDIN-2-YL)ETHOXY]BENZYL}-1,3-THIAZOLIDINE-2,4-DIONE
3
PE4
-1
Ligand/Ion
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
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Sites
(3, 3)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
LYS A:232 , GLY A:239 , LYS A:240 , THR A:241 , THR A:242 , ASP A:243 , LYS A:244 , ASN B:312
BINDING SITE FOR RESIDUE PE4 A1479
2
AC3
SOFTWARE
ILE B:249 , LEU B:255 , GLU B:259 , PHE B:264 , HIS B:266 , ARG B:280 , ILE B:281 , CYS B:285 , ARG B:288 , ALA B:292 , LEU B:330 , ILE B:341 , MET B:348 , MET B:364 , HOH B:2088
BINDING SITE FOR RESIDUE P1B B1475
3
AC4
SOFTWARE
ILE B:236 , LEU B:237 , SER B:245 , PHE B:247 , VAL B:248 , MET B:257 , ASN B:335 , PHE B:347 , HOH B:2013 , HOH B:2016
BINDING SITE FOR RESIDUE EPE B1476
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_010725 (Q286P, chain B, )
2: VAR_010726 (R288H, chain B, )
3: VAR_010727 (V290M, chain B, )
4: VAR_022700 (F360L, chain B, )
5: VAR_022701 (R397C, chain B, )
6: VAR_010728 (P467L, chain B, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_010725
Q
314
P
PPARG_HUMAN
Unclassified
28936407
B
Q
286
P
2
UniProt
VAR_010726
R
316
H
PPARG_HUMAN
Unclassified
28936407
B
R
288
H
3
UniProt
VAR_010727
V
318
M
PPARG_HUMAN
Unclassified
---
B
V
290
M
4
UniProt
VAR_022700
F
388
L
PPARG_HUMAN
Disease (FPLD3)
---
B
F
360
L
5
UniProt
VAR_022701
R
425
C
PPARG_HUMAN
Disease (FPLD3)
---
B
R
397
C
6
UniProt
VAR_010728
P
495
L
PPARG_HUMAN
Unclassified
---
B
P
467
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2xkwa_ (A:)
1b: SCOP_d2xkwb_ (B:)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Peroxisome proliferator activated receptor gamma, PPAR-gamma
(83)
Human (Homo sapiens) [TaxId: 9606]
(83)
1a
d2xkwa_
A:
1b
d2xkwb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Protein
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Chain B
Asymmetric Unit 1
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Asym.Unit (192 KB)
Header - Asym.Unit
Biol.Unit 1 (93 KB)
Header - Biol.Unit 1
Biol.Unit 2 (91 KB)
Header - Biol.Unit 2
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