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2XK6
Asym. Unit
Info
Asym.Unit (92 KB)
Biol.Unit 1 (87 KB)
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(1)
Title
:
STRUCTURE OF NEK2 BOUND TO AMINOPYRAZINE COMPOUND 36
Authors
:
C. Mas-Droux, R. Bayliss
Date
:
07 Jul 10 (Deposition) - 27 Oct 10 (Release) - 25 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transferase, Centrosome, Mitosis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. K. Whelligan, S. Solanki, D. Taylor, D. W. Thomson, K. M. Cheung, K. Boxall, C. Mas-Droux, C. Barillari, S. Burns, C. G. Grummitt, I. Collins, R. L. Van Montfort, G. W. Aherne, R. Bayliss, S. Hoelder
Aminopyrazine Inhibitors Binding To An Unusual Inactive Conformation Of The Mitotic Kinase Nek2: Sar And Structural Characterization.
J. Med. Chem. V. 53 7682 2010
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: CIS-4-[3-AMINO-6-(3-CYCLOPROPYLTHI... (EQHa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
EQH
1
Ligand/Ion
CIS-4-[3-AMINO-6-(3-CYCLOPROPYLTHIOPHEN-2-YL)PYRAZIN-2-YL]CYCLOHEXANECARBOXYLIC ACID
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:14 , CYS A:22 , VAL A:35 , LYS A:37 , TYR A:70 , MET A:86 , GLU A:87 , TYR A:88 , CYS A:89 , GLU A:90 , GLY A:92 , ASP A:93 , PHE A:148 , ASP A:159 , HOH A:2198
BINDING SITE FOR RESIDUE EQH A1280
2
AC2
SOFTWARE
ASN A:154 , HIS A:277 , HIS A:279 , HOH A:2113
BINDING SITE FOR RESIDUE CL A1281
3
AC3
SOFTWARE
HOH A:2075
BINDING SITE FOR RESIDUE CL A1282
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ST (A:140-149)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
NEK2_HUMAN
137-149
1
A:140-149
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Exons
(6, 6)
Info
All Exons
Exon 1.1a (A:4-32 (gaps))
Exon 1.2 (A:33-105)
Exon 1.3 (A:105-185 (gaps))
Exon 1.4a (A:186-213 (gaps))
Exon 1.5a (A:213-255)
Exon 1.6b (A:256-279)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4a
5: Boundary 1.4a/1.5a
6: Boundary 1.5a/1.6b
7: Boundary 1.6b/1.7a
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000366999
1a
ENSE00001443207
chr1:
211848960-211848726
235
NEK2_HUMAN
1-32
32
1
A:4-32 (gaps)
29
1.2
ENST00000366999
2
ENSE00001010392
chr1:
211847855-211847638
218
NEK2_HUMAN
33-105
73
1
A:33-105
73
1.3
ENST00000366999
3
ENSE00001167194
chr1:
211847065-211846825
241
NEK2_HUMAN
105-185
81
1
A:105-185 (gaps)
81
1.4a
ENST00000366999
4a
ENSE00001010393
chr1:
211844626-211844544
83
NEK2_HUMAN
186-213
28
1
A:186-213 (gaps)
28
1.5a
ENST00000366999
5a
ENSE00001010397
chr1:
211843749-211843623
127
NEK2_HUMAN
213-255
43
1
A:213-255
43
1.6b
ENST00000366999
6b
ENSE00001010396
chr1:
211842674-211842455
220
NEK2_HUMAN
256-329
74
1
A:256-279
24
1.7a
ENST00000366999
7a
ENSE00000792201
chr1:
211840573-211840448
126
NEK2_HUMAN
329-371
43
0
-
-
1.8b
ENST00000366999
8b
ENSE00001443206
chr1:
211836994-211836114
881
NEK2_HUMAN
371-445
75
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2xk6a_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d2xk6a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Pkinase_2xk6A01 (A:8-271)
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Clans
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)
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
1a
Pkinase-2xk6A01
A:8-271
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Chain A
Asymmetric Unit 1
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