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2XJR
Asym. Unit
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Asym.Unit (116 KB)
Biol.Unit 1 (110 KB)
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(1)
Title
:
X-RAY STRUCTURE OF THE N-TERMINAL DOMAIN OF THE FLOCCULIN FLO5 FROM SACCHAROMYCES CEREVISIAE IN COMPLEX WITH CALCIUM AND MAN5(D2-D3)
Authors
:
M. Veelders, S. Brueckner, D. Ott, C. Unverzagt, H. -U. Moesch, L. -O. Es
Date
:
06 Jul 10 (Deposition) - 15 Dec 10 (Release) - 13 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.25
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cell Adhesion, Greenbeard, Pa14-Domain, Carbohydrate Binding, Social Interaction
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Veelders, S. Brueckner, D. Ott, C. Unverzagt, H. -U. Moesch, L. -O. Essen
Structural Basis Of Flocculin-Mediated Social Behavior In Yeast
Proc. Natl. Acad. Sci. Usa V. 107 22511 2010
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Hetero Components
(5, 10)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: CHLORIDE ION (CLa)
3a: GLYCEROL (GOLa)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
CL
1
Ligand/Ion
CHLORIDE ION
3
GOL
1
Ligand/Ion
GLYCEROL
4
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
5
NA
2
Ligand/Ion
SODIUM ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:160 , ASP A:161 , ASN A:224 , VAL A:226 , TRP A:228 , MAN A:1278
BINDING SITE FOR RESIDUE CA A1272
2
AC2
SOFTWARE
ASP A:82 , ASN A:84 , GLN A:98 , HOH A:2033 , HOH A:2108 , HOH A:2170 , HOH A:2192 , HOH A:2374 , HOH A:2389
BINDING SITE FOR RESIDUE NA A1273
3
AC3
SOFTWARE
TYR A:102 , CYS A:107 , GLY A:109 , GLY A:111
BINDING SITE FOR RESIDUE CL A1274
4
AC4
SOFTWARE
PRO A:86 , PHE A:94 , PRO A:95 , HOH A:2047 , HOH A:2186 , HOH A:2338
BINDING SITE FOR RESIDUE NA A1275
5
AC5
SOFTWARE
SER A:170 , GLU A:174 , HOH A:2062 , HOH A:2142 , HOH A:2278 , HOH A:2307
BINDING SITE FOR RESIDUE CA A1276
6
AC6
SOFTWARE
ASN A:104 , TRP A:105 , CYS A:113 , ASN A:115 , HIS A:271 , HOH A:2100 , HOH A:2242 , HOH A:2243 , HOH A:2274
BINDING SITE FOR RESIDUE GOL A1277
7
AC7
SOFTWARE
GLN A:98 , ASN A:104 , GLN A:117 , GLY A:118 , ASP A:160 , ASP A:161 , VAL A:226 , SER A:227 , TRP A:228 , CA A:1272 , HOH A:2193 , HOH A:2228 , HOH A:2238 , HOH A:2324 , HOH A:2358 , HOH A:2363 , HOH A:2364
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 1278 TO 1281
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PA14 (A:74-249)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PA14
PS51820
PA14 domain profile.
FLO5_YEAST
74-249
1
A:74-249
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2xjra_ (A:)
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Protein Domains
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(
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Anthrax protective antigen N-terminal-like
(32)
Superfamily
:
PA14-like
(32)
Family
:
GLEYA domain
(15)
Protein domain
:
GLEYA domain
(7)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
(7)
1a
d2xjra_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PA14_2xjrA01 (A:84-249)
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Clans
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Organisms
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(
)
Clan
:
PA14
(11)
Family
:
PA14
(11)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(7)
1a
PA14-2xjrA01
A:84-249
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Chain A
Asymmetric Unit 1
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Asym.Unit (116 KB)
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