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2XHN
Biol. Unit 1
Info
Asym.Unit (510 KB)
Biol.Unit 1 (253 KB)
Biol.Unit 2 (256 KB)
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(1)
Title
:
RHAMNOGALACTURONAN LYASE FROM ASPERGILLUS ACULEATUS K150A ACTIVE SITE MUTANT
Authors
:
M. H. Jensen, H. Otten, U. Christensen, T. V. Borchert, L. L. H. Christen S. Larsen, L. Lo Leggio
Date
:
18 Jun 10 (Deposition) - 29 Sep 10 (Release) - 20 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.52
Chains
:
Asym. Unit : A,B
Biol. Unit 1: B (1x)
Biol. Unit 2: A (1x)
Keywords
:
Carbohydrate Active Enzyme, Lyase, Pectin, Degradation, Polysaccharide Lyase Family 4
(Keyword Search:
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Reference
:
M. H. Jensen, H. Otten, U. Christensen, T. V. Borchert, L. L. H. Christensen, S. Larsen, L. L. Leggio
Structural And Biochemical Studies Elucidate The Mechanism Of Rhamnogalacturonan Lyase From Aspergillus Aculeatus.
J. Mol. Biol. V. 404 100 2010
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: 1,2-ETHANEDIOL (EDOa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
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No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
EDO
-1
Ligand/Ion
1,2-ETHANEDIOL
3
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC7 (SOFTWARE)
2: AC8 (SOFTWARE)
3: AC9 (SOFTWARE)
4: ACB (AUTHOR)
5: BC1 (SOFTWARE)
6: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC7
SOFTWARE
GLU B:347 , ASP B:349 , GLN B:351 , ASP B:502 , HOH B:2725
BINDING SITE FOR RESIDUE CA B 801
2
AC8
SOFTWARE
ASN B:19 , SER B:229 , ARG B:230 , SER B:231 , GLY B:232 , HOH B:2059 , HOH B:2528 , HOH B:2534 , HOH B:2920 , HOH B:2922
BINDING SITE FOR RESIDUE SO4 B 905
3
AC9
SOFTWARE
LYS B:395 , SER B:490 , HOH B:2780 , HOH B:2781
BINDING SITE FOR RESIDUE SO4 B 906
4
ACB
AUTHOR
ALA B:150 , HIS B:210
ACTIVE SITE
5
BC1
SOFTWARE
ARG B:429 , GLY B:488 , HOH B:2923
BINDING SITE FOR RESIDUE SO4 B 907
6
BC2
SOFTWARE
GLN B:47 , SER B:53 , ARG B:107 , ARG B:111 , HOH B:2496 , HOH B:2926 , HOH B:2927
BINDING SITE FOR RESIDUE SO4 B 908
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2xhna3 (A:338-508)
1b: SCOP_d2xhnb3 (B:338-508)
2a: SCOP_d2xhna2 (A:251-337)
2b: SCOP_d2xhnb2 (B:251-337)
3a: SCOP_d2xhna1 (A:1-250)
3b: SCOP_d2xhnb1 (B:1-250)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
automated matches
(85)
Protein domain
:
automated matches
(85)
Fungus (Aspergillus aculeatus) [TaxId: 5053]
(1)
1a
d2xhna3
A:338-508
1b
d2xhnb3
B:338-508
Fold
:
Prealbumin-like
(433)
Superfamily
:
Starch-binding domain-like
(84)
Family
:
automated matches
(6)
Protein domain
:
automated matches
(6)
Fungus (Aspergillus aculeatus) [TaxId: 5053]
(1)
2a
d2xhna2
A:251-337
2b
d2xhnb2
B:251-337
Fold
:
Supersandwich
(271)
Superfamily
:
Galactose mutarotase-like
(205)
Family
:
Rhamnogalacturonase B, RhgB, N-terminal domain
(4)
Protein domain
:
automated matches
(1)
Fungus (Aspergillus aculeatus) [TaxId: 5053]
(1)
3a
d2xhna1
A:1-250
3b
d2xhnb1
B:1-250
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CATH Domains
(0, 0)
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Pfam Domains
(0, 0)
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Chain B
Asymmetric Unit 1
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Asym.Unit (510 KB)
Header - Asym.Unit
Biol.Unit 1 (253 KB)
Header - Biol.Unit 1
Biol.Unit 2 (256 KB)
Header - Biol.Unit 2
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